Miyakogusa Predicted Gene
- Lj0g3v0272159.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0272159.1 tr|I0Z5L3|I0Z5L3_9CHLO NAF1-domain-containing
protein OS=Coccomyxa subellipsoidea C-169 PE=4
SV=1,37.25,1e-17,seg,NULL; Translation proteins,Translation
elongation/initiation factor/Ribosomal, beta-barrel;
Gar1,gene.g21137.t1.1
(193 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr0072s0050.1 | Gar1/Naf1 RNA-binding region protein | HC | s... 193 8e-50
Medtr2g090095.1 | Gar1/Naf1 RNA-binding region protein | LC | ch... 186 1e-47
Medtr2g090095.2 | Gar1/Naf1 RNA-binding region protein | LC | ch... 156 1e-38
Medtr7g116780.1 | Gar1/Naf1 RNA-binding region protein | LC | ch... 84 8e-17
>Medtr0072s0050.1 | Gar1/Naf1 RNA-binding region protein | HC |
scaffold0072:33818-29673 | 20130731
Length = 567
Score = 193 bits (491), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 94/156 (60%), Positives = 118/156 (75%), Gaps = 7/156 (4%)
Query: 3 KNDDELEVLPWVPPVNVTLGPHHQMLPVGVVMSILGAQVIVEGVEKHDPLNEGSILWMTE 62
K+ +E++ LP VPPV+V L PHH+MLPVGVVMS LGAQVIVEGVEKH+PLNEGS+LW+TE
Sbjct: 177 KSKNEIQNLPPVPPVDVCLAPHHKMLPVGVVMSTLGAQVIVEGVEKHEPLNEGSVLWLTE 236
Query: 63 SRRPLGFIEEIFGPVEHPYYIVRYNSENEVPEGIRGG-TLISFVPEFANHVLRDEELYKK 121
SR+PLG ++EIFGPV++PYY+VRYNSEN+VP GI+GG TL+S VPEFA HVL +++LY+K
Sbjct: 237 SRKPLGLVDEIFGPVKNPYYVVRYNSENDVPAGIQGGTTLVSCVPEFAEHVLNNKDLYRK 296
Query: 122 GYXXXXX------XXXXXXXXXXXXXYKRMQTMAKR 151
GY Y++MQ M KR
Sbjct: 297 GYDASGAYDEELFDEVEFSDDEKEAEYRKMQKMTKR 332
>Medtr2g090095.1 | Gar1/Naf1 RNA-binding region protein | LC |
chr2:38174085-38171015 | 20130731
Length = 631
Score = 186 bits (472), Expect = 1e-47, Method: Composition-based stats.
Identities = 89/118 (75%), Positives = 103/118 (87%)
Query: 6 DELEVLPWVPPVNVTLGPHHQMLPVGVVMSILGAQVIVEGVEKHDPLNEGSILWMTESRR 65
+ELE L VPPVNV LGPHH+MLPVGVV SI+G +VIVEGVEKHDPLNEGSILW+TE +
Sbjct: 154 NELENLSRVPPVNVNLGPHHKMLPVGVVTSIVGVRVIVEGVEKHDPLNEGSILWITERQT 213
Query: 66 PLGFIEEIFGPVEHPYYIVRYNSENEVPEGIRGGTLISFVPEFANHVLRDEELYKKGY 123
PLG I+E+FG V++PYY+VRYNSE EVPEGIR GTLISFV EF NHVL +++LYKKGY
Sbjct: 214 PLGLIDEVFGQVKNPYYVVRYNSEKEVPEGIREGTLISFVAEFVNHVLNNKDLYKKGY 271
>Medtr2g090095.2 | Gar1/Naf1 RNA-binding region protein | LC |
chr2:38173234-38170993 | 20130731
Length = 457
Score = 156 bits (394), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 74/97 (76%), Positives = 86/97 (88%)
Query: 27 MLPVGVVMSILGAQVIVEGVEKHDPLNEGSILWMTESRRPLGFIEEIFGPVEHPYYIVRY 86
MLPVGVV SI+G +VIVEGVEKHDPLNEGSILW+TE + PLG I+E+FG V++PYY+VRY
Sbjct: 1 MLPVGVVTSIVGVRVIVEGVEKHDPLNEGSILWITERQTPLGLIDEVFGQVKNPYYVVRY 60
Query: 87 NSENEVPEGIRGGTLISFVPEFANHVLRDEELYKKGY 123
NSE EVPEGIR GTLISFV EF NHVL +++LYKKGY
Sbjct: 61 NSEKEVPEGIREGTLISFVAEFVNHVLNNKDLYKKGY 97
>Medtr7g116780.1 | Gar1/Naf1 RNA-binding region protein | LC |
chr7:48245064-48244526 | 20130731
Length = 130
Score = 84.0 bits (206), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 42/71 (59%), Positives = 52/71 (73%), Gaps = 4/71 (5%)
Query: 51 PLNEGSILWMTESRRPLGFIEEIFGPVEHPYYIVRYNSENEVPEGIRGGTLISFVPEFAN 110
PL EGSILW+TE + LG I+EIFG V++PYY VRYNSE +GIR GTLISFV EF N
Sbjct: 5 PLIEGSILWITERQTSLGLIDEIFGQVKNPYYAVRYNSE----KGIREGTLISFVAEFVN 60
Query: 111 HVLRDEELYKK 121
+V+ + K+
Sbjct: 61 YVMHPVSMMKR 71