Miyakogusa Predicted Gene

Lj0g3v0271889.1
Show Alignment: 

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0271889.1 tr|A9SGP8|A9SGP8_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_164794,37.65,0.000000000000003,seg,NULL,CUFF.17978.1
         (137 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g091770.1 | transmembrane protein, putative | HC | chr3:41...   118   2e-27
Medtr3g091770.2 | transmembrane protein, putative | HC | chr3:41...   118   2e-27
Medtr3g091770.3 | transmembrane protein, putative | HC | chr3:41...   118   2e-27
Medtr1g007840.1 | transmembrane protein, putative | HC | chr1:58...    86   1e-17
Medtr1g007840.2 | transmembrane protein, putative | HC | chr1:58...    86   1e-17
Medtr7g117715.1 | transmembrane protein, putative | HC | chr7:48...    68   2e-12
Medtr8g027430.1 | transmembrane protein, putative | HC | chr8:97...    58   3e-09

>Medtr3g091770.1 | transmembrane protein, putative | HC |
           chr3:41778284-41773956 | 20130731
          Length = 416

 Score =  118 bits (296), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 69/137 (50%), Positives = 79/137 (57%), Gaps = 7/137 (5%)

Query: 1   MAELLEALCHSQTXXXXXXXXXXXXYNEKEHILSLFFRQASQLFAYKQWFHXXXXXXXXX 60
           + ELLEALCHSQT            YNEKEHILSLFF+QASQLFAYKQW++         
Sbjct: 287 ITELLEALCHSQTRAREAEKAAQEAYNEKEHILSLFFKQASQLFAYKQWYYMLQLENLCL 346

Query: 61  XXRNKNQPLLSLFPSALHRVPSRGTLHKKSPGKGGKRKNCNRRCGIQNCIVAFAVXXXXX 120
             RNKNQPLL+LFP   HR   R  L KK+  K  KRK  NR+CGI  C+VAFAV     
Sbjct: 347 QLRNKNQPLLNLFP---HR---RMQL-KKNRNKAEKRKINNRKCGIGKCVVAFAVGLSLA 399

Query: 121 XXXXXXXXXXXXMFPTL 137
                       MFP++
Sbjct: 400 GAGLLLGWTMGWMFPSM 416


>Medtr3g091770.2 | transmembrane protein, putative | HC |
           chr3:41778296-41773956 | 20130731
          Length = 416

 Score =  118 bits (296), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 69/137 (50%), Positives = 79/137 (57%), Gaps = 7/137 (5%)

Query: 1   MAELLEALCHSQTXXXXXXXXXXXXYNEKEHILSLFFRQASQLFAYKQWFHXXXXXXXXX 60
           + ELLEALCHSQT            YNEKEHILSLFF+QASQLFAYKQW++         
Sbjct: 287 ITELLEALCHSQTRAREAEKAAQEAYNEKEHILSLFFKQASQLFAYKQWYYMLQLENLCL 346

Query: 61  XXRNKNQPLLSLFPSALHRVPSRGTLHKKSPGKGGKRKNCNRRCGIQNCIVAFAVXXXXX 120
             RNKNQPLL+LFP   HR   R  L KK+  K  KRK  NR+CGI  C+VAFAV     
Sbjct: 347 QLRNKNQPLLNLFP---HR---RMQL-KKNRNKAEKRKINNRKCGIGKCVVAFAVGLSLA 399

Query: 121 XXXXXXXXXXXXMFPTL 137
                       MFP++
Sbjct: 400 GAGLLLGWTMGWMFPSM 416


>Medtr3g091770.3 | transmembrane protein, putative | HC |
           chr3:41778274-41773956 | 20130731
          Length = 416

 Score =  118 bits (296), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 69/137 (50%), Positives = 79/137 (57%), Gaps = 7/137 (5%)

Query: 1   MAELLEALCHSQTXXXXXXXXXXXXYNEKEHILSLFFRQASQLFAYKQWFHXXXXXXXXX 60
           + ELLEALCHSQT            YNEKEHILSLFF+QASQLFAYKQW++         
Sbjct: 287 ITELLEALCHSQTRAREAEKAAQEAYNEKEHILSLFFKQASQLFAYKQWYYMLQLENLCL 346

Query: 61  XXRNKNQPLLSLFPSALHRVPSRGTLHKKSPGKGGKRKNCNRRCGIQNCIVAFAVXXXXX 120
             RNKNQPLL+LFP   HR   R  L KK+  K  KRK  NR+CGI  C+VAFAV     
Sbjct: 347 QLRNKNQPLLNLFP---HR---RMQL-KKNRNKAEKRKINNRKCGIGKCVVAFAVGLSLA 399

Query: 121 XXXXXXXXXXXXMFPTL 137
                       MFP++
Sbjct: 400 GAGLLLGWTMGWMFPSM 416


>Medtr1g007840.1 | transmembrane protein, putative | HC |
           chr1:589317-592263 | 20130731
          Length = 421

 Score = 85.5 bits (210), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/137 (43%), Positives = 68/137 (49%), Gaps = 13/137 (9%)

Query: 2   AELLEALCHSQTXXXXXXXXXXXXYNEKEHILSLFFRQASQLFAYKQWFHXXXXXXXXXX 61
           AELL+ALC SQT             +EKEHILSLFF+QASQLFAYKQW H          
Sbjct: 297 AELLKALCRSQTRAREAEKAAQEACDEKEHILSLFFKQASQLFAYKQWLHVLQLENLCLQ 356

Query: 62  XRNKNQPLL-SLFPSALHRVPSRGTLHKKSPGKGGKRKNCNRRCGIQNCIVAFAVXXXXX 120
            ++KNQPLL +LF       P  G  H+K      +RK  N R GI  CI AFAV     
Sbjct: 357 YKSKNQPLLNNLF-------PYEGKKHRK-----NRRKVKNSRRGIGKCIFAFAVGLALA 404

Query: 121 XXXXXXXXXXXXMFPTL 137
                       MFP+ 
Sbjct: 405 GAGLLLGWTIGCMFPSF 421


>Medtr1g007840.2 | transmembrane protein, putative | HC |
           chr1:589371-592263 | 20130731
          Length = 421

 Score = 85.5 bits (210), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/137 (43%), Positives = 68/137 (49%), Gaps = 13/137 (9%)

Query: 2   AELLEALCHSQTXXXXXXXXXXXXYNEKEHILSLFFRQASQLFAYKQWFHXXXXXXXXXX 61
           AELL+ALC SQT             +EKEHILSLFF+QASQLFAYKQW H          
Sbjct: 297 AELLKALCRSQTRAREAEKAAQEACDEKEHILSLFFKQASQLFAYKQWLHVLQLENLCLQ 356

Query: 62  XRNKNQPLL-SLFPSALHRVPSRGTLHKKSPGKGGKRKNCNRRCGIQNCIVAFAVXXXXX 120
            ++KNQPLL +LF       P  G  H+K      +RK  N R GI  CI AFAV     
Sbjct: 357 YKSKNQPLLNNLF-------PYEGKKHRK-----NRRKVKNSRRGIGKCIFAFAVGLALA 404

Query: 121 XXXXXXXXXXXXMFPTL 137
                       MFP+ 
Sbjct: 405 GAGLLLGWTIGCMFPSF 421


>Medtr7g117715.1 | transmembrane protein, putative | HC |
           chr7:48879055-48876354 | 20130731
          Length = 426

 Score = 68.2 bits (165), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/119 (36%), Positives = 56/119 (47%), Gaps = 7/119 (5%)

Query: 2   AELLEALCHSQTXXXXXXXXXXXXYNEKEHILSLFFRQASQLFAYKQWFHXXXXXXXXXX 61
           A+LLEALCHSQT            Y E+EHIL+L F+QASQLFAYKQ             
Sbjct: 288 AQLLEALCHSQTRAREAEEAAKQAYAEREHILTLIFKQASQLFAYKQLIKLLQLETLCNQ 347

Query: 62  XRNKNQPLLSLFPSAL-----HRVPSRGTLHKKSPGKGGKRKNCNRRCGIQNCIVAFAV 115
            +N +    +LFP  L      R  SR    K++   G + +     C I    VA A+
Sbjct: 348 IKNNDLSTSTLFPVDLPWMSYERRKSRK--RKQTYSNGRREREGKSNCDITTYAVAIAL 404


>Medtr8g027430.1 | transmembrane protein, putative | HC |
           chr8:9713276-9715847 | 20130731
          Length = 372

 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 26/47 (55%), Positives = 32/47 (68%)

Query: 3   ELLEALCHSQTXXXXXXXXXXXXYNEKEHILSLFFRQASQLFAYKQW 49
           +L+EALCHSQT            Y +KE I++LFF QASQL+AYKQW
Sbjct: 240 QLMEALCHSQTRAREAEELAKQAYADKERIIALFFIQASQLYAYKQW 286