Miyakogusa Predicted Gene

Lj0g3v0271879.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0271879.1 Non Characterized Hit- tr|G7I3G5|G7I3G5_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,78.95,6e-19,Pcc1,EKC/KEOPS complex, subunit
Pcc1,CUFF.17975.1
         (93 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g007870.3 | transcription factor Pcc1 | HC | chr1:604727-6...   147   2e-36
Medtr1g007870.1 | transcription factor Pcc1 | HC | chr1:604727-6...   147   2e-36
Medtr1g007870.2 | transcription factor Pcc1 | HC | chr1:604727-6...   147   2e-36
Medtr3g091850.1 | transcription factor Pcc1 | HC | chr3:41910531...   141   1e-34
Medtr3g091850.3 | transcription factor Pcc1 | HC | chr3:41910384...   141   1e-34
Medtr3g091850.2 | transcription factor Pcc1 | HC | chr3:41910515...   141   1e-34

>Medtr1g007870.3 | transcription factor Pcc1 | HC |
          chr1:604727-606101 | 20130731
          Length = 93

 Score =  147 bits (371), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 74/92 (80%), Positives = 81/92 (88%), Gaps = 6/92 (6%)

Query: 8  DAQSQS------DLEVDFGCEENASIVYAALAVDKELHPDKVTQLMKVSNGKLSVHFEAV 61
          DAQSQS      DLEVDFG +ENASIVYAALAVDKEL P+KV ++M VS+GKLSVHFEA+
Sbjct: 2  DAQSQSQWDFTSDLEVDFGSQENASIVYAALAVDKELQPNKVKRIMAVSDGKLSVHFEAI 61

Query: 62 EARFLRASFSAFLDVLTLATNTIEEFGQGMEL 93
          EARFLRASFSAF+DVLTLAT TIEEFGQGMEL
Sbjct: 62 EARFLRASFSAFVDVLTLATKTIEEFGQGMEL 93


>Medtr1g007870.1 | transcription factor Pcc1 | HC |
          chr1:604727-606101 | 20130731
          Length = 93

 Score =  147 bits (371), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 74/92 (80%), Positives = 81/92 (88%), Gaps = 6/92 (6%)

Query: 8  DAQSQS------DLEVDFGCEENASIVYAALAVDKELHPDKVTQLMKVSNGKLSVHFEAV 61
          DAQSQS      DLEVDFG +ENASIVYAALAVDKEL P+KV ++M VS+GKLSVHFEA+
Sbjct: 2  DAQSQSQWDFTSDLEVDFGSQENASIVYAALAVDKELQPNKVKRIMAVSDGKLSVHFEAI 61

Query: 62 EARFLRASFSAFLDVLTLATNTIEEFGQGMEL 93
          EARFLRASFSAF+DVLTLAT TIEEFGQGMEL
Sbjct: 62 EARFLRASFSAFVDVLTLATKTIEEFGQGMEL 93


>Medtr1g007870.2 | transcription factor Pcc1 | HC |
          chr1:604727-606101 | 20130731
          Length = 93

 Score =  147 bits (371), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 74/92 (80%), Positives = 81/92 (88%), Gaps = 6/92 (6%)

Query: 8  DAQSQS------DLEVDFGCEENASIVYAALAVDKELHPDKVTQLMKVSNGKLSVHFEAV 61
          DAQSQS      DLEVDFG +ENASIVYAALAVDKEL P+KV ++M VS+GKLSVHFEA+
Sbjct: 2  DAQSQSQWDFTSDLEVDFGSQENASIVYAALAVDKELQPNKVKRIMAVSDGKLSVHFEAI 61

Query: 62 EARFLRASFSAFLDVLTLATNTIEEFGQGMEL 93
          EARFLRASFSAF+DVLTLAT TIEEFGQGMEL
Sbjct: 62 EARFLRASFSAFVDVLTLATKTIEEFGQGMEL 93


>Medtr3g091850.1 | transcription factor Pcc1 | HC |
          chr3:41910531-41907589 | 20130731
          Length = 95

 Score =  141 bits (355), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 73/90 (81%), Positives = 75/90 (83%), Gaps = 4/90 (4%)

Query: 8  DAQSQ----SDLEVDFGCEENASIVYAALAVDKELHPDKVTQLMKVSNGKLSVHFEAVEA 63
          DAQSQ     DL VDFG EENASIVYA L VDKEL PDKV +L  VSNGKLSVHFEA EA
Sbjct: 6  DAQSQWDFSCDLVVDFGSEENASIVYATLMVDKELQPDKVKRLTTVSNGKLSVHFEATEA 65

Query: 64 RFLRASFSAFLDVLTLATNTIEEFGQGMEL 93
          RFLRASFSAF+DVLTLAT TIEEFGQGMEL
Sbjct: 66 RFLRASFSAFVDVLTLATKTIEEFGQGMEL 95


>Medtr3g091850.3 | transcription factor Pcc1 | HC |
          chr3:41910384-41907589 | 20130731
          Length = 95

 Score =  141 bits (355), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 73/90 (81%), Positives = 75/90 (83%), Gaps = 4/90 (4%)

Query: 8  DAQSQ----SDLEVDFGCEENASIVYAALAVDKELHPDKVTQLMKVSNGKLSVHFEAVEA 63
          DAQSQ     DL VDFG EENASIVYA L VDKEL PDKV +L  VSNGKLSVHFEA EA
Sbjct: 6  DAQSQWDFSCDLVVDFGSEENASIVYATLMVDKELQPDKVKRLTTVSNGKLSVHFEATEA 65

Query: 64 RFLRASFSAFLDVLTLATNTIEEFGQGMEL 93
          RFLRASFSAF+DVLTLAT TIEEFGQGMEL
Sbjct: 66 RFLRASFSAFVDVLTLATKTIEEFGQGMEL 95


>Medtr3g091850.2 | transcription factor Pcc1 | HC |
          chr3:41910515-41907589 | 20130731
          Length = 95

 Score =  141 bits (355), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 73/90 (81%), Positives = 75/90 (83%), Gaps = 4/90 (4%)

Query: 8  DAQSQ----SDLEVDFGCEENASIVYAALAVDKELHPDKVTQLMKVSNGKLSVHFEAVEA 63
          DAQSQ     DL VDFG EENASIVYA L VDKEL PDKV +L  VSNGKLSVHFEA EA
Sbjct: 6  DAQSQWDFSCDLVVDFGSEENASIVYATLMVDKELQPDKVKRLTTVSNGKLSVHFEATEA 65

Query: 64 RFLRASFSAFLDVLTLATNTIEEFGQGMEL 93
          RFLRASFSAF+DVLTLAT TIEEFGQGMEL
Sbjct: 66 RFLRASFSAFVDVLTLATKTIEEFGQGMEL 95