Miyakogusa Predicted Gene

Lj0g3v0271849.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0271849.1 tr|I3SP94|I3SP94_LOTJA Uroporphyrinogen
decarboxylase OS=Lotus japonicus PE=2
SV=1,97.05,0,UROD/MetE-like,NULL; UROD_1,Uroporphyrinogen
decarboxylase (URO-D); UROD_2,Uroporphyrinogen decarbox,CUFF.18097.1
         (407 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g076340.1 | uroporphyrinogen decarboxylase | HC | chr2:319...   706   0.0  
Medtr3g072330.1 | uroporphyrinogen decarboxylase | HC | chr3:324...   397   e-110

>Medtr2g076340.1 | uroporphyrinogen decarboxylase | HC |
           chr2:31981646-31987745 | 20130731
          Length = 407

 Score =  706 bits (1821), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/405 (87%), Positives = 372/405 (91%), Gaps = 7/405 (1%)

Query: 1   MATSVTSCGLGWKSSSLFAHSTTSGFNLISPSFKPKP---KFSLTCSVASSSS-DPLLVK 56
           + TS+ S GLGWKSS LF  S    FNL+S  FKPKP   KF+LTCS ASSSS DPLLVK
Sbjct: 4   IPTSINS-GLGWKSSPLFQQSNC--FNLLSSPFKPKPSLTKFTLTCSAASSSSSDPLLVK 60

Query: 57  AARGDPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVEISLQPWKAFRPDG 116
           AARGDPVSRPPAWMMRQAGRYMA+YRKLAEKHPSFRERSETTDLIVEISLQPWKAFRPDG
Sbjct: 61  AARGDPVSRPPAWMMRQAGRYMAIYRKLAEKHPSFRERSETTDLIVEISLQPWKAFRPDG 120

Query: 117 VIIFSDILTPLPAFGIEFDIEDVRGPVIQSPIRSEEGLKALHSIDLDRLRFVGDSLKLLR 176
           VIIFSDILTPLPAFGI+FDIEDVRGPVIQSPIRSEEGLK LH ID D+LRFVG+SLK+L+
Sbjct: 121 VIIFSDILTPLPAFGIDFDIEDVRGPVIQSPIRSEEGLKVLHPIDFDKLRFVGESLKILQ 180

Query: 177 QEAGGHAAVLGFVGAPWTLATYIVEGGTTRTYTTIKSMCHTAPDILRTLLSHLSQAIADY 236
           QE GG AAVLGFVGAPWTLATYIVEGGTTRTYT IKSMCHTAP ILRTLLSHLS+AIADY
Sbjct: 181 QEVGGDAAVLGFVGAPWTLATYIVEGGTTRTYTNIKSMCHTAPHILRTLLSHLSKAIADY 240

Query: 237 IVFQVESGAHCIQIFDSWGGQLPPSMWESWSKPYITEIVKVVKKKCPETPIVLYINGNGG 296
           IVFQVESGAHCIQIFDSWGGQLPP MWE WSKPYI EIV +VKKKCP+TP+VLYINGNGG
Sbjct: 241 IVFQVESGAHCIQIFDSWGGQLPPHMWELWSKPYIKEIVNLVKKKCPDTPLVLYINGNGG 300

Query: 297 LLERMVDTGVDVIGLDWTVDMADGRRRLGSGIGVQGNVDPASLFSPLSSLTEEIQRVVKC 356
           LLERMVDTGVDVIGLDWTVDMADGRRRLGSGIGVQGNVDPASLFSPL+SLTEEIQRVV+ 
Sbjct: 301 LLERMVDTGVDVIGLDWTVDMADGRRRLGSGIGVQGNVDPASLFSPLTSLTEEIQRVVRS 360

Query: 357 AGPRGHILNLGHGVLVGTPEEAVAHFFEVARSLKFDTHFQNTTAN 401
           AGPR HILNLGHGVLVGTPEEAVAHFF+VARSLKFDT  QN TAN
Sbjct: 361 AGPRQHILNLGHGVLVGTPEEAVAHFFDVARSLKFDTVSQNNTAN 405


>Medtr3g072330.1 | uroporphyrinogen decarboxylase | HC |
           chr3:32489055-32484665 | 20130731
          Length = 389

 Score =  397 bits (1019), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 190/364 (52%), Positives = 257/364 (70%), Gaps = 9/364 (2%)

Query: 37  PKFSLTCSV--------ASSSSDPLLVKAARGDPVSRPPAWMMRQAGRYMAVYRKLAEKH 88
           P  S+ CS+         +++++PLL+ A RG  V RPP W+MRQAGRYM  Y+ + EK+
Sbjct: 26  PFKSIQCSLPGAVAEPKTNNATEPLLLNAVRGLDVERPPVWLMRQAGRYMKSYQIICEKY 85

Query: 89  PSFRERSETTDLIVEISLQPWKAFRPDGVIIFSDILTPLPAFGIEFDIEDVRGPVIQSPI 148
           PSFRERSE  DL+VEISLQPWK F+PDGVI+FSDILTPL    I FDI   +GPVI  P+
Sbjct: 86  PSFRERSENVDLVVEISLQPWKVFQPDGVILFSDILTPLSGMNIPFDIVKGKGPVIFDPV 145

Query: 149 RSEEGLKALHS-IDLDRLRFVGDSLKLLRQEAGGHAAVLGFVGAPWTLATYIVEGGTTRT 207
            S   +  +   I  + + +VG++L +LR+E    +AVLGFVGAP+TLA+Y+VEGG+++ 
Sbjct: 146 HSAGQVDQVREFIPEESVPYVGEALSILRKEVDNKSAVLGFVGAPFTLASYVVEGGSSKH 205

Query: 208 YTTIKSMCHTAPDILRTLLSHLSQAIADYIVFQVESGAHCIQIFDSWGGQLPPSMWESWS 267
           ++ IK +  + P IL +LL   + ++A YI +Q ++GA  +QIFDSW  +L P  +E +S
Sbjct: 206 FSKIKRLAFSEPKILHSLLQKFTTSMARYIQYQADNGAQAVQIFDSWATELSPVDFERFS 265

Query: 268 KPYITEIVKVVKKKCPETPIVLYINGNGGLLERMVDTGVDVIGLDWTVDMADGRRRLGSG 327
            PY+ +I+  VKK  PE P++LY +G+GGLLER+  TGVDV+ LDWTVDMADGRRRLG  
Sbjct: 266 LPYLKQIIDTVKKSHPELPLILYASGSGGLLERIALTGVDVVSLDWTVDMADGRRRLGPN 325

Query: 328 IGVQGNVDPASLFSPLSSLTEEIQRVVKCAGPRGHILNLGHGVLVGTPEEAVAHFFEVAR 387
           + +QGNVDP  LF     +T+ I   V+ AG   HILNLGHG++VGTPEE VAHFFEVA+
Sbjct: 326 VAIQGNVDPGVLFGSKELITDRIHDTVRKAGRGKHILNLGHGIVVGTPEENVAHFFEVAK 385

Query: 388 SLKF 391
            +K+
Sbjct: 386 GIKY 389