Miyakogusa Predicted Gene

Lj0g3v0271779.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0271779.1 tr|C7QXI5|C7QXI5_CYAP0 Rieske (2Fe-2S) domain
protein OS=Cyanothece sp. (strain PCC 8802) GN=Cyan880,47.73,5e-19,ISP
domain,Rieske [2Fe-2S] iron-sulphur domain; RIESKE,Rieske [2Fe-2S]
iron-sulphur domain; no descr,CUFF.17965.1
         (192 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g105820.1 | translocon at the inner envelope membrane ofs ...   290   5e-79
Medtr8g085790.2 | chlorophyllide A oxygenase | HC | chr8:3556849...    90   1e-18
Medtr8g085820.1 | chlorophyllide A oxygenase | HC | chr8:3558306...    90   1e-18
Medtr8g085790.1 | chlorophyllide A oxygenase | HC | chr8:3556833...    90   1e-18
Medtr8g085840.1 | chlorophyllide A oxygenase | HC | chr8:3559444...    90   2e-18
Medtr4g057200.1 | lethal leaf-spot protein, putative | HC | chr4...    83   2e-16
Medtr1g030480.1 | chlorophyllide A oxygenase | HC | chr1:1044132...    72   3e-13

>Medtr3g105820.1 | translocon at the inner envelope membrane ofs
           protein 55-II | HC | chr3:48812416-48815358 | 20130731
          Length = 552

 Score =  290 bits (742), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 146/198 (73%), Positives = 165/198 (83%), Gaps = 6/198 (3%)

Query: 1   MALINQFIFPTQTCFPLHVSASQSKQVLLWSLTSNPF----KPVLPSSRRKNTKW-GATA 55
           MAL+N F+ PT+T F L VS   SKQ+LLW+  S+ F       L SSRRK+  +  ATA
Sbjct: 1   MALVNPFLLPTKTHFALPVSPPPSKQILLWTSPSSSFSFNLNKGLSSSRRKHAGYLPATA 60

Query: 56  DIKTAP-LLDGEEDHKVLVGPSSEEERRGDRVVADYDWTEEWYPLYLTKNVPEDAPLGLK 114
           D+KTA  LLD EED KVLVGPSSE+ERRG+R +A YDW EEWYPLYLTKNVP+DAPLGL 
Sbjct: 61  DVKTASTLLDVEEDQKVLVGPSSEQERRGERELAAYDWKEEWYPLYLTKNVPDDAPLGLT 120

Query: 115 VFDKDLVLFRDGNGEFRCYEDRCPHRLAKLSEGQLIDGRIECLYHGWQFEGEGKCVKIPQ 174
           VFDK+LVLF+DGN +F+CYEDRCPHRLAKLSEGQLIDGR+ECLYHGWQFEGEGKCVKIPQ
Sbjct: 121 VFDKNLVLFKDGNDQFQCYEDRCPHRLAKLSEGQLIDGRLECLYHGWQFEGEGKCVKIPQ 180

Query: 175 LPADAKIPKSACVKTYEA 192
           LPADAKIP+SACVKTYE 
Sbjct: 181 LPADAKIPRSACVKTYEV 198


>Medtr8g085790.2 | chlorophyllide A oxygenase | HC |
           chr8:35568496-35565845 | 20130731
          Length = 396

 Score = 90.1 bits (222), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 82/158 (51%), Gaps = 10/158 (6%)

Query: 40  VLPSSRRKNTKWGATADIKTAPLLDGEEDHKVLVGPSSEEERRGDRVVADYDWTEEWYPL 99
            LP  R   +K+     +  +PL +    + + V    E E   ++    +DW  +WYPL
Sbjct: 34  TLPLIRGNTSKFKLFTALSPSPLTESSSSN-LEVDDEPEVETGSEK----FDWYSQWYPL 88

Query: 100 YLTKNVPEDAPLGLKVFDKDLVLFRDGN-GEFRCYEDRCPHRLAKLSEGQLID-GRIECL 157
               ++ + AP   KV   D+V++ D N   ++ ++D CPHRLA LSEG++   GR++C+
Sbjct: 89  MPICDLDKRAPHAKKVMGIDVVIWWDRNESAWQVFDDACPHRLAPLSEGRIDQWGRLQCV 148

Query: 158 YHGWQFEGEGKCVKIPQLPADA---KIPKSACVKTYEA 192
           YHGW F G G C  IPQ P +       K ACV  Y +
Sbjct: 149 YHGWCFNGSGDCKFIPQAPPEGPPIHTSKKACVAAYPS 186


>Medtr8g085820.1 | chlorophyllide A oxygenase | HC |
           chr8:35583064-35577716 | 20130731
          Length = 527

 Score = 90.1 bits (222), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 81/156 (51%), Gaps = 10/156 (6%)

Query: 40  VLPSSRRKNTKWGATADIKTAPLLDGEEDHKVLVGPSSEEERRGDRVVADYDWTEEWYPL 99
            LP  R   +K+     +  +PL +    + + V    E E   ++    +DW  +WYPL
Sbjct: 10  TLPLIRGNTSKFKLFTALSPSPLTESSSSN-LEVDDEPEVETGSEK----FDWYSQWYPL 64

Query: 100 YLTKNVPEDAPLGLKVFDKDLVLFRDGN-GEFRCYEDRCPHRLAKLSEGQLID-GRIECL 157
               ++ + AP   KV   D+V++ D N   ++ ++D CPHRLA LSEG++   GR++C+
Sbjct: 65  MPICDLDKRAPHAKKVMGIDVVIWWDRNESAWQVFDDACPHRLAPLSEGRIDQWGRLQCV 124

Query: 158 YHGWQFEGEGKCVKIPQLPADA---KIPKSACVKTY 190
           YHGW F G G C  IPQ P +       K ACV  Y
Sbjct: 125 YHGWCFNGSGDCKFIPQAPPEGPPIHTSKKACVAAY 160


>Medtr8g085790.1 | chlorophyllide A oxygenase | HC |
           chr8:35568333-35564786 | 20130731
          Length = 532

 Score = 90.1 bits (222), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 82/158 (51%), Gaps = 10/158 (6%)

Query: 40  VLPSSRRKNTKWGATADIKTAPLLDGEEDHKVLVGPSSEEERRGDRVVADYDWTEEWYPL 99
            LP  R   +K+     +  +PL +    + + V    E E   ++    +DW  +WYPL
Sbjct: 10  TLPLIRGNTSKFKLFTALSPSPLTESSSSN-LEVDDEPEVETGSEK----FDWYSQWYPL 64

Query: 100 YLTKNVPEDAPLGLKVFDKDLVLFRDGN-GEFRCYEDRCPHRLAKLSEGQLID-GRIECL 157
               ++ + AP   KV   D+V++ D N   ++ ++D CPHRLA LSEG++   GR++C+
Sbjct: 65  MPICDLDKRAPHAKKVMGIDVVIWWDRNESAWQVFDDACPHRLAPLSEGRIDQWGRLQCV 124

Query: 158 YHGWQFEGEGKCVKIPQLPADA---KIPKSACVKTYEA 192
           YHGW F G G C  IPQ P +       K ACV  Y +
Sbjct: 125 YHGWCFNGSGDCKFIPQAPPEGPPIHTSKKACVAAYPS 162


>Medtr8g085840.1 | chlorophyllide A oxygenase | HC |
           chr8:35594442-35589475 | 20130731
          Length = 529

 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 81/156 (51%), Gaps = 10/156 (6%)

Query: 40  VLPSSRRKNTKWGATADIKTAPLLDGEEDHKVLVGPSSEEERRGDRVVADYDWTEEWYPL 99
            LP  R   +K+     +  +PL +    + + V    E E   ++    +DW  +WYPL
Sbjct: 34  TLPLIRGNASKFKLFTALSPSPLTESSSSN-LEVDDEPEVETGSEK----FDWYSQWYPL 88

Query: 100 YLTKNVPEDAPLGLKVFDKDLVLFRDGN-GEFRCYEDRCPHRLAKLSEGQLID-GRIECL 157
               ++ + AP   KV   D+V++ D N   ++ ++D CPHRLA LSEG++   GR++C+
Sbjct: 89  MPICDLDKRAPHAKKVMGIDVVIWWDRNESAWQVFDDACPHRLAPLSEGRIDQWGRLQCV 148

Query: 158 YHGWQFEGEGKCVKIPQLPADA---KIPKSACVKTY 190
           YHGW F G G C  IPQ P +       K ACV  Y
Sbjct: 149 YHGWCFNGSGDCKFIPQAPPEGPPIHTSKKACVAAY 184


>Medtr4g057200.1 | lethal leaf-spot protein, putative | HC |
           chr4:20906265-20911203 | 20130731
          Length = 542

 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 57/87 (65%), Gaps = 2/87 (2%)

Query: 90  YDWTEEWYPLYLTKNVPEDAPLGLKVFDKDLVLFRD-GNGEFRCYEDRCPHRLAKLSEGQ 148
           + W + WYP+ L +++    P   ++  +++V++ D  N ++  ++D+CPHRLA LSEG+
Sbjct: 90  FSWRDHWYPVSLIEDLDSSLPTPFQLLGREIVIWFDKANSQWVAFDDKCPHRLAPLSEGR 149

Query: 149 LID-GRIECLYHGWQFEGEGKCVKIPQ 174
           + + G ++C YHGW F+G G C  IPQ
Sbjct: 150 IDESGNLQCSYHGWSFDGRGGCTVIPQ 176


>Medtr1g030480.1 | chlorophyllide A oxygenase | HC |
           chr1:10441327-10436366 | 20130731
          Length = 531

 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 50/78 (64%)

Query: 96  WYPLYLTKNVPEDAPLGLKVFDKDLVLFRDGNGEFRCYEDRCPHRLAKLSEGQLIDGRIE 155
           WYP+  + ++ +D+ + ++ F++  V+FR  +G+  C ++ C HR   L  G + +GRI 
Sbjct: 213 WYPVAFSADLKDDSMVPMECFEEPWVIFRGKDGKPGCVQNTCAHRACPLHLGSVNEGRIA 272

Query: 156 CLYHGWQFEGEGKCVKIP 173
           C YHGW++  +GKC K+P
Sbjct: 273 CPYHGWEYTTDGKCEKMP 290