Miyakogusa Predicted Gene

Lj0g3v0271729.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0271729.1 tr|Q6H525|Q6H525_ORYSJ Os02g0230300 protein
OS=Oryza sativa subsp. japonica GN=OSJNBb0035N08.30
PE=4,40.51,9e-19,seg,NULL,CUFF.17992.1
         (345 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g089570.1 | pollen Ole e I family allergens | HC | chr3:16...   111   1e-24

>Medtr3g089570.1 | pollen Ole e I family allergens | HC |
           chr3:16299572-16301945 | 20130731
          Length = 272

 Score =  111 bits (277), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 52/80 (65%), Positives = 62/80 (77%)

Query: 266 CNYWSTHPXXXXXXXXXXXXXXSAFGVTNAPGFGAGISLPQALSNTRSDGLGALYREGTA 325
           CNYW THP              +AFGVTN PGF  G++LPQALSNTR+DGLGALYREGTA
Sbjct: 162 CNYWRTHPGIIWGILGWWGNMGNAFGVTNIPGFSPGLTLPQALSNTRTDGLGALYREGTA 221

Query: 326 SYLNSLVNSKFPFTTNQVRE 345
           S+LNSLVN+KFP+TT+QV++
Sbjct: 222 SFLNSLVNNKFPYTTDQVKD 241