Miyakogusa Predicted Gene

Lj0g3v0271699.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0271699.1 Non Characterized Hit- tr|I1M6X0|I1M6X0_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.57246
PE,34.72,0.000000000000003,coiled-coil,NULL; seg,NULL,CUFF.17961.1
         (171 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g008430.1 | transmembrane protein, putative | HC | chr5:17...    87   1e-17
Medtr5g091710.1 | tropomyosin-like protein, putative | HC | chr5...    70   1e-12

>Medtr5g008430.1 | transmembrane protein, putative | HC |
           chr5:1778111-1776914 | 20130731
          Length = 220

 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/182 (38%), Positives = 96/182 (52%), Gaps = 22/182 (12%)

Query: 5   TPNITAALERENAEKDDQIKTLKAEIERLRDGXXXXXXXXXXXXTRIEDLEREVKELRQG 64
             + TA LE+E A    ++   K EIE+LR               +IE +E+E KEL+Q 
Sbjct: 46  NSDSTAELEKEAARLRREVVESKVEIEKLR-------KIIDEKENKIEIVEKEGKELKQE 98

Query: 65  NTEKEMKVRELERMLGVVQMTEVEERSKRVRAEEEMREKVDEKDREI------------- 111
           N E EMKVRELER +GV++M EVEE SKRVR EEEM+EK+ EK+ E+             
Sbjct: 99  NVEMEMKVRELERRIGVIEMKEVEENSKRVRIEEEMKEKIYEKEMEVEELKSMLMGKKVE 158

Query: 112 -EGFLQEIQEFEEKIRVLELRIRSMK-MKESENLQWPXXXXXXXXXXXXXXXLIHFWFRK 169
            E +L++ +  E+K  V E  + +MK +   E L WP               L+ F+F K
Sbjct: 159 EEKWLKDKRVLEKKFGVFEFSLMNMKDIIGFELLNWPVLAAGSAGSIAMVVVLMRFFFGK 218

Query: 170 RR 171
           RR
Sbjct: 219 RR 220


>Medtr5g091710.1 | tropomyosin-like protein, putative | HC |
           chr5:40018589-40021260 | 20130731
          Length = 345

 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/73 (47%), Positives = 58/73 (79%)

Query: 50  RIEDLEREVKELRQGNTEKEMKVRELERMLGVVQMTEVEERSKRVRAEEEMREKVDEKDR 109
           R+E+L +EV+ L++   E E +V++LE+ +GV++M E+EER+KR+R EEE+R+ + EKDR
Sbjct: 164 RVEELVKEVEGLKKVKAESEARVKDLEKRIGVLEMKEIEERNKRIRVEEELRDTIGEKDR 223

Query: 110 EIEGFLQEIQEFE 122
           EI+GF  +++E E
Sbjct: 224 EIDGFRNKVEELE 236