Miyakogusa Predicted Gene

Lj0g3v0271229.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0271229.1 Non Characterized Hit- tr|I1M6H3|I1M6H3_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
PE=3,55.56,0.000000000000004,Pectin lyase-like,Pectin lyase
fold/virulence factor; no description,NULL; no description,Pectin
lya,CUFF.17925.1
         (186 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g095490.1 | pectinesterase | HC | chr5:41736379-41738796 |...    72   3e-13
Medtr3g091550.1 | ATP-dependent Clp protease regulatory subunit ...    56   2e-08
Medtr6g059910.1 | ATP-dependent Clp protease regulatory subunit ...    48   7e-06

>Medtr5g095490.1 | pectinesterase | HC | chr5:41736379-41738796 |
           20130731
          Length = 359

 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 44/81 (54%), Positives = 56/81 (69%), Gaps = 6/81 (7%)

Query: 51  DLAEDGHDNRVRSYISWEDLKVDEQSLALKSNNDVRVIMVDQH-----GREHSKTVQGAV 105
           DLAE      VR+YISWEDL V+EQ L +K +N+V+  +V        G+  SKTVQGAV
Sbjct: 20  DLAECVKGG-VRNYISWEDLIVNEQRLVVKKSNNVQNNVVRVIVVDRNGKGDSKTVQGAV 78

Query: 106 DMVPDHNTKRVKIYMFPGVYR 126
           D+VP+ N +RVKIY+FPG YR
Sbjct: 79  DLVPNGNKQRVKIYIFPGTYR 99


>Medtr3g091550.1 | ATP-dependent Clp protease regulatory subunit
           ClpX | HC | chr3:41648807-41642783 | 20130731
          Length = 581

 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/45 (62%), Positives = 33/45 (73%)

Query: 9   SDIASSLLETVLTEPKNALGNQYKKMFQINGVKLHFTQSAIMDLA 53
           S +  + L  VLTEPK+AL  QYKK FQINGVKLHFT+SA   +A
Sbjct: 437 SALTENQLIQVLTEPKSALEKQYKKTFQINGVKLHFTESARKSIA 481


>Medtr6g059910.1 | ATP-dependent Clp protease regulatory subunit
           ClpX | HC | chr6:20566263-20573202 | 20130731
          Length = 662

 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/46 (52%), Positives = 31/46 (67%)

Query: 9   SDIASSLLETVLTEPKNALGNQYKKMFQINGVKLHFTQSAIMDLAE 54
           S +    L  VLTEPK+ALG QYKK+  +N VKLHFT  A+  +A+
Sbjct: 518 SALTEEQLMQVLTEPKHALGKQYKKLVGMNEVKLHFTDKALRMIAK 563