Miyakogusa Predicted Gene

Lj0g3v0270299.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0270299.2 tr|Q9AXJ3|Q9AXJ3_MANES RNA polymerase I, II and
III subunit RPB8 (Fragment) OS=Manihot esculenta
PE=,66.13,7e-19,DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT
RPABC3,NULL; DNA-DIRECTED RNA POLYMERASES I, II,,CUFF.17875.2
         (98 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g056890.2 | DNA-directed RNA polymerase I, II | HC | chr1:...   181   2e-46
Medtr1g056890.1 | DNA-directed RNA polymerase I, II | HC | chr1:...   181   2e-46
Medtr6g090500.1 | DNA-directed RNA polymerase I, II | HC | chr6:...    77   3e-15
Medtr6g090500.2 | DNA-directed RNA polymerase I, II | HC | chr6:...    77   3e-15
Medtr4g133090.4 | DNA-directed RNA polymerase I, II | HC | chr4:...    77   3e-15
Medtr4g133090.1 | DNA-directed RNA polymerase I, II | HC | chr4:...    77   3e-15
Medtr4g133090.3 | DNA-directed RNA polymerase I, II | HC | chr4:...    77   3e-15
Medtr4g133090.2 | DNA-directed RNA polymerase I, II | HC | chr4:...    77   3e-15

>Medtr1g056890.2 | DNA-directed RNA polymerase I, II | HC |
          chr1:24915813-24911971 | 20130731
          Length = 145

 Score =  181 bits (458), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 85/98 (86%), Positives = 93/98 (94%)

Query: 1  MVEILFDDIFRVEKLNPDDKKLFEKVTRIEARSERFDMFMHLDINSELYPLKVGQKFALL 60
          MVE L +DIFRVEK+NPDDKKLFEKVTRIEARSE+FDMFM LDINSELYPLK+GQKF+L 
Sbjct: 1  MVESLLEDIFRVEKVNPDDKKLFEKVTRIEARSEKFDMFMQLDINSELYPLKMGQKFSLA 60

Query: 61 LVPTLNPDGTPDTGYYVPGNRQSLADNFEYVMYGKLYK 98
          LVPTLNPDGTPDTGYY PGNRQS+ADN+EYVMYGKLY+
Sbjct: 61 LVPTLNPDGTPDTGYYNPGNRQSIADNYEYVMYGKLYR 98


>Medtr1g056890.1 | DNA-directed RNA polymerase I, II | HC |
          chr1:24915821-24911996 | 20130731
          Length = 145

 Score =  181 bits (458), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 85/98 (86%), Positives = 93/98 (94%)

Query: 1  MVEILFDDIFRVEKLNPDDKKLFEKVTRIEARSERFDMFMHLDINSELYPLKVGQKFALL 60
          MVE L +DIFRVEK+NPDDKKLFEKVTRIEARSE+FDMFM LDINSELYPLK+GQKF+L 
Sbjct: 1  MVESLLEDIFRVEKVNPDDKKLFEKVTRIEARSEKFDMFMQLDINSELYPLKMGQKFSLA 60

Query: 61 LVPTLNPDGTPDTGYYVPGNRQSLADNFEYVMYGKLYK 98
          LVPTLNPDGTPDTGYY PGNRQS+ADN+EYVMYGKLY+
Sbjct: 61 LVPTLNPDGTPDTGYYNPGNRQSIADNYEYVMYGKLYR 98


>Medtr6g090500.1 | DNA-directed RNA polymerase I, II | HC |
          chr6:34012888-34016300 | 20130731
          Length = 140

 Score = 77.0 bits (188), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 43/99 (43%), Positives = 63/99 (63%), Gaps = 13/99 (13%)

Query: 1  MVEILFDDIFRVEKLNPDDKKLFEKVTRIEARSERFDMFMHLDINSELYPLKVGQKFALL 60
          M E+LFDD F++  +NP+ +K ++KV+RI ARSE+  M M LD+N+E+YP+   +KF L 
Sbjct: 1  MSELLFDDFFKIVDVNPNGEK-YDKVSRIVARSEKHGMHMLLDVNTEIYPMDRKEKFLLA 59

Query: 61 LVPT--LNPDGTPDTGYYVPGNRQSLADNFEYVMYGKLY 97
          L P+  LN    P           S+ + FEY+MYG+LY
Sbjct: 60 LSPSLVLNTKDGP----------VSIQEKFEYIMYGRLY 88


>Medtr6g090500.2 | DNA-directed RNA polymerase I, II | HC |
          chr6:34012888-34016300 | 20130731
          Length = 140

 Score = 77.0 bits (188), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 43/99 (43%), Positives = 63/99 (63%), Gaps = 13/99 (13%)

Query: 1  MVEILFDDIFRVEKLNPDDKKLFEKVTRIEARSERFDMFMHLDINSELYPLKVGQKFALL 60
          M E+LFDD F++  +NP+ +K ++KV+RI ARSE+  M M LD+N+E+YP+   +KF L 
Sbjct: 1  MSELLFDDFFKIVDVNPNGEK-YDKVSRIVARSEKHGMHMLLDVNTEIYPMDRKEKFLLA 59

Query: 61 LVPT--LNPDGTPDTGYYVPGNRQSLADNFEYVMYGKLY 97
          L P+  LN    P           S+ + FEY+MYG+LY
Sbjct: 60 LSPSLVLNTKDGP----------VSIQEKFEYIMYGRLY 88


>Medtr4g133090.4 | DNA-directed RNA polymerase I, II | HC |
          chr4:55679027-55684512 | 20130731
          Length = 140

 Score = 77.0 bits (188), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 43/99 (43%), Positives = 63/99 (63%), Gaps = 13/99 (13%)

Query: 1  MVEILFDDIFRVEKLNPDDKKLFEKVTRIEARSERFDMFMHLDINSELYPLKVGQKFALL 60
          M E+LFDD F++  +NP+ +K ++KV+RI ARSE+  M M LD+N+E+YP+   +KF L 
Sbjct: 1  MSELLFDDFFKIVDVNPNGEK-YDKVSRIVARSEKHGMHMLLDVNTEIYPMDRKEKFLLA 59

Query: 61 LVPT--LNPDGTPDTGYYVPGNRQSLADNFEYVMYGKLY 97
          L P+  LN    P           S+ + FEY+MYG+LY
Sbjct: 60 LSPSLVLNTKDGP----------VSIQEKFEYIMYGRLY 88


>Medtr4g133090.1 | DNA-directed RNA polymerase I, II | HC |
          chr4:55679027-55684512 | 20130731
          Length = 140

 Score = 77.0 bits (188), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 43/99 (43%), Positives = 63/99 (63%), Gaps = 13/99 (13%)

Query: 1  MVEILFDDIFRVEKLNPDDKKLFEKVTRIEARSERFDMFMHLDINSELYPLKVGQKFALL 60
          M E+LFDD F++  +NP+ +K ++KV+RI ARSE+  M M LD+N+E+YP+   +KF L 
Sbjct: 1  MSELLFDDFFKIVDVNPNGEK-YDKVSRIVARSEKHGMHMLLDVNTEIYPMDRKEKFLLA 59

Query: 61 LVPT--LNPDGTPDTGYYVPGNRQSLADNFEYVMYGKLY 97
          L P+  LN    P           S+ + FEY+MYG+LY
Sbjct: 60 LSPSLVLNTKDGP----------VSIQEKFEYIMYGRLY 88


>Medtr4g133090.3 | DNA-directed RNA polymerase I, II | HC |
          chr4:55679017-55684501 | 20130731
          Length = 140

 Score = 77.0 bits (188), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 43/99 (43%), Positives = 63/99 (63%), Gaps = 13/99 (13%)

Query: 1  MVEILFDDIFRVEKLNPDDKKLFEKVTRIEARSERFDMFMHLDINSELYPLKVGQKFALL 60
          M E+LFDD F++  +NP+ +K ++KV+RI ARSE+  M M LD+N+E+YP+   +KF L 
Sbjct: 1  MSELLFDDFFKIVDVNPNGEK-YDKVSRIVARSEKHGMHMLLDVNTEIYPMDRKEKFLLA 59

Query: 61 LVPT--LNPDGTPDTGYYVPGNRQSLADNFEYVMYGKLY 97
          L P+  LN    P           S+ + FEY+MYG+LY
Sbjct: 60 LSPSLVLNTKDGP----------VSIQEKFEYIMYGRLY 88


>Medtr4g133090.2 | DNA-directed RNA polymerase I, II | HC |
          chr4:55678930-55684512 | 20130731
          Length = 140

 Score = 77.0 bits (188), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 43/99 (43%), Positives = 63/99 (63%), Gaps = 13/99 (13%)

Query: 1  MVEILFDDIFRVEKLNPDDKKLFEKVTRIEARSERFDMFMHLDINSELYPLKVGQKFALL 60
          M E+LFDD F++  +NP+ +K ++KV+RI ARSE+  M M LD+N+E+YP+   +KF L 
Sbjct: 1  MSELLFDDFFKIVDVNPNGEK-YDKVSRIVARSEKHGMHMLLDVNTEIYPMDRKEKFLLA 59

Query: 61 LVPT--LNPDGTPDTGYYVPGNRQSLADNFEYVMYGKLY 97
          L P+  LN    P           S+ + FEY+MYG+LY
Sbjct: 60 LSPSLVLNTKDGP----------VSIQEKFEYIMYGRLY 88