Miyakogusa Predicted Gene

Lj0g3v0269649.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0269649.1 Non Characterized Hit- tr|I1IUZ7|I1IUZ7_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,50.38,2e-19,coiled-coil,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL; seg,NULL,CUFF.17814.1
         (133 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g073980.1 | phototropic-responsive NPH3 family protein | H...   194   2e-50
Medtr4g022330.1 | phototropic-responsive NPH3 family protein | H...   106   8e-24
Medtr1g088885.1 | phototropic-responsive NPH3 family protein | H...    89   9e-19
Medtr7g108290.1 | phototropic-responsive NPH3 family protein | H...    89   1e-18
Medtr5g016060.1 | phototropic-responsive NPH3 family protein | H...    52   2e-07
Medtr5g016060.2 | phototropic-responsive NPH3 family protein | H...    52   2e-07
Medtr4g095430.1 | phototropic-responsive NPH3 family protein | H...    50   4e-07

>Medtr7g073980.1 | phototropic-responsive NPH3 family protein | HC |
           chr7:27610820-27607868 | 20130731
          Length = 641

 Score =  194 bits (493), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 102/128 (79%), Positives = 106/128 (82%), Gaps = 2/128 (1%)

Query: 1   MVVQVLYVEQLRLKNAXXXXXXXXXXXQRISSGVPSAAMSPRDNYASLRRENRELKLEIS 60
           MVVQVLY EQLRLKNA           QR+SSGVPSAAMSPRDNYASLRRENRELKLEIS
Sbjct: 478 MVVQVLYFEQLRLKNAVSGSSGDGLLSQRMSSGVPSAAMSPRDNYASLRRENRELKLEIS 537

Query: 61  RLRVRLSELEKEQMFMKQGMIHKVGNGRTFLTSISKGIGRIAMFSSQGRGKRQKSVRKSR 120
           RLRVRLSELEKEQMFMKQGMI K  NG+TF TS+SKGIGRIA FSSQG GKRQK+ RKSR
Sbjct: 538 RLRVRLSELEKEQMFMKQGMIDKAENGKTFFTSLSKGIGRIANFSSQGGGKRQKASRKSR 597

Query: 121 --EGKTGR 126
             EGK GR
Sbjct: 598 GTEGKNGR 605


>Medtr4g022330.1 | phototropic-responsive NPH3 family protein | HC |
           chr4:7377094-7373551 | 20130731
          Length = 617

 Score =  106 bits (264), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 58/107 (54%), Positives = 76/107 (71%), Gaps = 6/107 (5%)

Query: 2   VVQVLYVEQLRLKNAXXXXXXXX----XXXQRISSGVPSAAMSPRDNYASLRRENRELKL 57
           +VQVLY EQL+L+N+                RISSG  SAAMSPRDNYASLRRENRELKL
Sbjct: 481 IVQVLYFEQLKLRNSLSTTGDDDIKPMHASWRISSGALSAAMSPRDNYASLRRENRELKL 540

Query: 58  EISRLRVRLSELEKEQMFMKQGMIHKVGNGRTFLTSISKGIGRIAMF 104
           E++RLR+RL++LE+E + MK+ M  K G  R F++S SK I ++++F
Sbjct: 541 ELARLRMRLNDLEREHVCMKRDMA-KSG-SRKFMSSFSKKISKLSLF 585


>Medtr1g088885.1 | phototropic-responsive NPH3 family protein | HC |
           chr1:39820960-39825413 | 20130731
          Length = 621

 Score = 89.4 bits (220), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 53/117 (45%), Positives = 72/117 (61%), Gaps = 10/117 (8%)

Query: 1   MVVQVLYVEQLRLKNAXXXXXXXXXX--------XQRISSGVPSAAMSPRDNYASLRREN 52
           M VQVLY EQ+RL+NA                   QR  SG  S AMSPRDNYAS+RREN
Sbjct: 483 MAVQVLYFEQIRLRNAMNGGGHNQLLFGGLNGQFPQRSGSGAGSGAMSPRDNYASVRREN 542

Query: 53  RELKLEISRLRVRLSELEKEQMFMKQGMIHKVGNGRTFLTSISKGIGRI-AMFSSQG 108
           RELKLE++R+R+RL++LEK+ + MKQ ++      + F  S +K + ++ A+F   G
Sbjct: 543 RELKLEVTRMRMRLTDLEKDHVSMKQELVKSHPANKLF-KSFTKKLSKLNALFRMNG 598


>Medtr7g108290.1 | phototropic-responsive NPH3 family protein | HC |
           chr7:44050581-44040258 | 20130731
          Length = 673

 Score = 89.0 bits (219), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/108 (45%), Positives = 71/108 (65%), Gaps = 8/108 (7%)

Query: 3   VQVLYVEQLRLKNAXXXXXXXX-------XXXQRISSGVPSAAMSPRDNYASLRRENREL 55
           VQVLY EQ+RL+NA                  QR  SG+ S A+SPRDNYAS+RRENREL
Sbjct: 489 VQVLYYEQIRLRNAMNGGHNQILFGGIHGQFPQRSGSGIGSGAISPRDNYASVRRENREL 548

Query: 56  KLEISRLRVRLSELEKEQMFMKQGMIHKVGNGRTFLTSISKGIGRIAM 103
           KLE++R+R+RL++LEK+ + MKQ ++ K    R F  S ++ + ++++
Sbjct: 549 KLEVTRMRMRLNDLEKDHVSMKQELV-KTHPARKFFKSFAQKLRKLSL 595


>Medtr5g016060.1 | phototropic-responsive NPH3 family protein | HC |
           chr5:5678637-5674775 | 20130731
          Length = 630

 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 69/146 (47%), Gaps = 28/146 (19%)

Query: 2   VVQVLYVEQLRLKNAXXXXXXXXXXXQRISSGVPSAAMSPRDNYASLRRENRELKLEISR 61
           VVQVLY EQ RL++A                 V S  +   +   SLRREN +LKLE+ +
Sbjct: 483 VVQVLYYEQQRLRDAMNGSETAESPSIHTKLNVYSGDIQVSNELTSLRRENEDLKLEVVK 542

Query: 62  LRVRLSELEKEQM------FMKQGMIHKVGNG---------------RTFLTSISKGIGR 100
           L+++L E+E   +       +K  +   + N                ++F++S+SK +G+
Sbjct: 543 LKMKLKEIEISTLKSTVKSTVKSTVNSPIANASPSHSHSADKPPLPRKSFISSVSKKLGK 602

Query: 101 IAMF-------SSQGRGKRQKSVRKS 119
           ++ F       S++G+ K  K+ R S
Sbjct: 603 LSPFPRLDGIVSAKGKIKPNKNRRHS 628


>Medtr5g016060.2 | phototropic-responsive NPH3 family protein | HC |
           chr5:5678726-5674851 | 20130731
          Length = 516

 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 69/146 (47%), Gaps = 28/146 (19%)

Query: 2   VVQVLYVEQLRLKNAXXXXXXXXXXXQRISSGVPSAAMSPRDNYASLRRENRELKLEISR 61
           VVQVLY EQ RL++A                 V S  +   +   SLRREN +LKLE+ +
Sbjct: 369 VVQVLYYEQQRLRDAMNGSETAESPSIHTKLNVYSGDIQVSNELTSLRRENEDLKLEVVK 428

Query: 62  LRVRLSELEKEQM------FMKQGMIHKVGNG---------------RTFLTSISKGIGR 100
           L+++L E+E   +       +K  +   + N                ++F++S+SK +G+
Sbjct: 429 LKMKLKEIEISTLKSTVKSTVKSTVNSPIANASPSHSHSADKPPLPRKSFISSVSKKLGK 488

Query: 101 IAMF-------SSQGRGKRQKSVRKS 119
           ++ F       S++G+ K  K+ R S
Sbjct: 489 LSPFPRLDGIVSAKGKIKPNKNRRHS 514


>Medtr4g095430.1 | phototropic-responsive NPH3 family protein | HC |
           chr4:39776803-39780967 | 20130731
          Length = 595

 Score = 50.4 bits (119), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 69/146 (47%), Gaps = 19/146 (13%)

Query: 2   VVQVLYVEQLRLKNAXXXXXXXXXXXQRISS--GVPSAAMSPRDNYAS-LRRENRELKLE 58
           V Q+LY EQ RL++                    V S+ + P  N  S LRREN ELKLE
Sbjct: 455 VAQILYYEQQRLRDNMDGTGSVGSDSPSTPDKRNVYSSELYPATNEVSKLRRENEELKLE 514

Query: 59  ISRLRVRLSELEKEQMF---MKQGMIHKVGNG--------RTFLTSISKGIGRIAMFSSQ 107
           I +L++++ E+EK  +    +   +++             ++FL S+S+ +GR++ F   
Sbjct: 515 IVKLKIKIKEMEKSTVLESPINSPLLNVSSPSADKPPLPRKSFLNSVSRKLGRLSPFQ-- 572

Query: 108 GRGKRQKSVRKSREGKTGRSRRYSVS 133
              +    +R     +  + RRYS+S
Sbjct: 573 ---RAHPVIRPKDRIQLDKIRRYSIS 595