Miyakogusa Predicted Gene
- Lj0g3v0269409.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0269409.2 tr|G7IL24|G7IL24_MEDTR E3 ubiquitin-protein
ligase UPL6 OS=Medicago truncatula GN=MTR_2g033040 PE=4 ,91.49,0,Hect,
E3 ligase catalytic domain,HECT; HECT,HECT; PREDICTED: HYPOTHETICAL
PROTEIN, PARTIAL,NULL; HEC,CUFF.17808.2
(94 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr2g033040.1 | E3 ubiquitin-protein ligase UPL6 | HC | chr2:1... 194 1e-50
Medtr7g103210.1 | E3 ubiquitin-protein ligase | HC | chr7:417324... 99 8e-22
Medtr4g094705.1 | E3 ubiquitin-protein ligase UPL1-like protein ... 82 1e-16
Medtr3g099777.1 | E3 ubiquitin-protein ligase UPL1-like protein ... 79 8e-16
Medtr4g094708.1 | E3 ubiquitin-protein ligase UPL1-like protein ... 79 8e-16
Medtr5g066710.1 | E3 ubiquitin-protein ligase UPL1-like protein ... 75 1e-14
Medtr4g073370.3 | E3 ubiquitin-protein ligase | HC | chr4:277808... 75 1e-14
Medtr4g073370.1 | E3 ubiquitin-protein ligase | HC | chr4:277808... 75 1e-14
Medtr4g073370.2 | E3 ubiquitin-protein ligase | HC | chr4:277807... 75 1e-14
Medtr1g066940.1 | E3 ubiquitin-protein ligase | HC | chr1:287815... 73 5e-14
Medtr1g066940.2 | E3 ubiquitin-protein ligase | HC | chr1:287815... 73 5e-14
Medtr1g066940.7 | E3 ubiquitin-protein ligase | HC | chr1:287813... 73 5e-14
Medtr7g103210.2 | E3 ubiquitin-protein ligase | HC | chr7:417324... 62 1e-10
Medtr1g066940.6 | E3 ubiquitin-protein ligase | HC | chr1:287815... 56 7e-09
Medtr1g066940.4 | E3 ubiquitin-protein ligase | HC | chr1:287815... 56 7e-09
>Medtr2g033040.1 | E3 ubiquitin-protein ligase UPL6 | HC |
chr2:12491348-12468569 | 20130731
Length = 1024
Score = 194 bits (494), Expect = 1e-50, Method: Composition-based stats.
Identities = 87/94 (92%), Positives = 93/94 (98%)
Query: 1 MLWEVLKGFSMENKKKFLKFVTGCSRGPLLGFRYLEPLFCIQRAGGNASEEALDRLPTSA 60
M WEVLKGFSMENKKKFLKFVTGCSRGPLLGFRYLEPLFCIQRAGGNA+E+ALDRLPT+A
Sbjct: 931 MFWEVLKGFSMENKKKFLKFVTGCSRGPLLGFRYLEPLFCIQRAGGNATEDALDRLPTAA 990
Query: 61 TCMNLLKLPPYRSKEQMETKLLYAINADAGFDLS 94
TCMNLLKLPPYRSK+QME+KLLYAIN+DAGFDLS
Sbjct: 991 TCMNLLKLPPYRSKDQMESKLLYAINSDAGFDLS 1024
>Medtr7g103210.1 | E3 ubiquitin-protein ligase | HC |
chr7:41732499-41720063 | 20130731
Length = 1148
Score = 99.0 bits (245), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 50/104 (48%), Positives = 67/104 (64%), Gaps = 14/104 (13%)
Query: 1 MLWEVLKGFSMENKKKFLKFVTGCSRGPLLGFRYLEPLFCIQRA----------GGNASE 50
+ WEV+KGF + + LKFVT CSRGPLLGF+YL+P F I + GG +E
Sbjct: 1049 IFWEVIKGFEPKERCMLLKFVTSCSRGPLLGFKYLQPPFTIHKVACDVPLWATIGGQDAE 1108
Query: 51 EALDRLPTSATCMNLLKLPPYRSKEQMETKLLYAINADAGFDLS 94
RLP+++TC N LKLP Y+ + KLLYAI+++AGF+LS
Sbjct: 1109 ----RLPSASTCYNTLKLPTYKRPGTLRAKLLYAISSNAGFELS 1148
>Medtr4g094705.1 | E3 ubiquitin-protein ligase UPL1-like protein | HC
| chr4:38771658-38789707 | 20130731
Length = 3737
Score = 82.0 bits (201), Expect = 1e-16, Method: Composition-based stats.
Identities = 43/91 (47%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 2 LWEVLKGFSMENKKKFLKFVTGCSRGPLLGFRYLEPLFCIQRAGGNASEEALDRLPTSAT 61
WEV+K FS E+ + L+FVTG S+ PL GF+ L+ + QR + + A DRLP++ T
Sbjct: 3644 FWEVVKSFSKEDMARLLQFVTGTSKVPLEGFKALQGISGPQRFQIHKAYGAPDRLPSAHT 3703
Query: 62 CMNLLKLPPYRSKEQMETKLLYAIN-ADAGF 91
C N L LP Y SKEQ++ +LL AI+ A GF
Sbjct: 3704 CFNQLDLPEYTSKEQLQDRLLLAIHEASEGF 3734
>Medtr3g099777.1 | E3 ubiquitin-protein ligase UPL1-like protein | HC
| chr3:45763706-45778962 | 20130731
Length = 3683
Score = 79.3 bits (194), Expect = 8e-16, Method: Composition-based stats.
Identities = 40/91 (43%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 2 LWEVLKGFSMENKKKFLKFVTGCSRGPLLGFRYLEPLFCIQRAGGNASEEALDRLPTSAT 61
WEV++GFS E+K + L+FVTG S+ PL GF L+ + Q+ + + + D LP++ T
Sbjct: 3590 FWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGAQKFQIHKAYGSSDHLPSAHT 3649
Query: 62 CMNLLKLPPYRSKEQMETKLLYAIN-ADAGF 91
C N L LP Y SK+ +E +LL AI+ A+ GF
Sbjct: 3650 CFNQLDLPEYPSKQHLEERLLLAIHEANEGF 3680
>Medtr4g094708.1 | E3 ubiquitin-protein ligase UPL1-like protein | HC
| chr4:38792991-38810995 | 20130731
Length = 3758
Score = 79.3 bits (194), Expect = 8e-16, Method: Composition-based stats.
Identities = 41/91 (45%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 2 LWEVLKGFSMENKKKFLKFVTGCSRGPLLGFRYLEPLFCIQRAGGNASEEALDRLPTSAT 61
WEV+K F+ E+ + L+FVTG S+ PL GF+ L+ + Q+ + + A DRLP++ T
Sbjct: 3665 FWEVVKSFNKEDMARLLQFVTGTSKVPLEGFKALQGISGPQKFQIHKAYGAPDRLPSAHT 3724
Query: 62 CMNLLKLPPYRSKEQMETKLLYAIN-ADAGF 91
C N L LP Y SKEQ++ +LL AI+ A GF
Sbjct: 3725 CFNQLDLPEYTSKEQLQDRLLLAIHEASEGF 3755
>Medtr5g066710.1 | E3 ubiquitin-protein ligase UPL1-like protein | HC
| chr5:28174356-28156957 | 20130731
Length = 3655
Score = 75.5 bits (184), Expect = 1e-14, Method: Composition-based stats.
Identities = 39/91 (42%), Positives = 57/91 (62%), Gaps = 1/91 (1%)
Query: 2 LWEVLKGFSMENKKKFLKFVTGCSRGPLLGFRYLEPLFCIQRAGGNASEEALDRLPTSAT 61
WEV++G S E+K + L+FVTG S+ PL GF L+ + Q+ + + + D LP++ T
Sbjct: 3562 FWEVVQGLSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSPDHLPSAHT 3621
Query: 62 CMNLLKLPPYRSKEQMETKLLYAIN-ADAGF 91
C N L LP Y SK+ +E +LL AI+ A GF
Sbjct: 3622 CFNQLDLPEYPSKQHLEERLLLAIHEASEGF 3652
>Medtr4g073370.3 | E3 ubiquitin-protein ligase | HC |
chr4:27780814-27770199 | 20130731
Length = 1881
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 55/105 (52%), Gaps = 12/105 (11%)
Query: 2 LWEVLKGFSMENKKKFLKFVTGCSRGPLLGFRYLEPLFCIQRA-----------GGNASE 50
L E++ F+ E ++ F +FVTG + P G L P I R G SE
Sbjct: 1777 LLEIMGEFTPEQQRAFCQFVTGAPKLPPGGLAVLNPKLTIVRKLSSTAANTTSNGNGPSE 1836
Query: 51 EALDRLPTSATCMNLLKLPPYRSKEQMETKLLYAINADAG-FDLS 94
A D LP+ TC N LKLPPY +KE M KL+YAIN G FDLS
Sbjct: 1837 TADDDLPSVMTCANYLKLPPYSTKEIMHKKLMYAINEGQGSFDLS 1881
>Medtr4g073370.1 | E3 ubiquitin-protein ligase | HC |
chr4:27780814-27770199 | 20130731
Length = 1881
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 55/105 (52%), Gaps = 12/105 (11%)
Query: 2 LWEVLKGFSMENKKKFLKFVTGCSRGPLLGFRYLEPLFCIQRA-----------GGNASE 50
L E++ F+ E ++ F +FVTG + P G L P I R G SE
Sbjct: 1777 LLEIMGEFTPEQQRAFCQFVTGAPKLPPGGLAVLNPKLTIVRKLSSTAANTTSNGNGPSE 1836
Query: 51 EALDRLPTSATCMNLLKLPPYRSKEQMETKLLYAINADAG-FDLS 94
A D LP+ TC N LKLPPY +KE M KL+YAIN G FDLS
Sbjct: 1837 TADDDLPSVMTCANYLKLPPYSTKEIMHKKLMYAINEGQGSFDLS 1881
>Medtr4g073370.2 | E3 ubiquitin-protein ligase | HC |
chr4:27780793-27770200 | 20130731
Length = 1881
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 55/105 (52%), Gaps = 12/105 (11%)
Query: 2 LWEVLKGFSMENKKKFLKFVTGCSRGPLLGFRYLEPLFCIQRA-----------GGNASE 50
L E++ F+ E ++ F +FVTG + P G L P I R G SE
Sbjct: 1777 LLEIMGEFTPEQQRAFCQFVTGAPKLPPGGLAVLNPKLTIVRKLSSTAANTTSNGNGPSE 1836
Query: 51 EALDRLPTSATCMNLLKLPPYRSKEQMETKLLYAINADAG-FDLS 94
A D LP+ TC N LKLPPY +KE M KL+YAIN G FDLS
Sbjct: 1837 TADDDLPSVMTCANYLKLPPYSTKEIMHKKLMYAINEGQGSFDLS 1881
>Medtr1g066940.1 | E3 ubiquitin-protein ligase | HC |
chr1:28781562-28771167 | 20130731
Length = 1549
Score = 73.2 bits (178), Expect = 5e-14, Method: Composition-based stats.
Identities = 43/94 (45%), Positives = 54/94 (57%), Gaps = 3/94 (3%)
Query: 2 LWEVLKGFSMENKKKFLKFVTGCSRGPLLGFRYLEPLFCIQRAGGNASEEALDRLPTSAT 61
L E+++ F ++ FL+FVTG R P G L P I R + S +A LP+ T
Sbjct: 1458 LLEIIREFDHGQRRAFLQFVTGTPRLPPGGLASLNPKLTIVRK--HCSNQADTDLPSVMT 1515
Query: 62 CMNLLKLPPYRSKEQMETKLLYAINADAG-FDLS 94
C N LKLPPY SKE+M+ KLLYAI G F LS
Sbjct: 1516 CANYLKLPPYSSKERMKEKLLYAITEGQGSFHLS 1549
>Medtr1g066940.2 | E3 ubiquitin-protein ligase | HC |
chr1:28781572-28771167 | 20130731
Length = 1549
Score = 73.2 bits (178), Expect = 5e-14, Method: Composition-based stats.
Identities = 43/94 (45%), Positives = 54/94 (57%), Gaps = 3/94 (3%)
Query: 2 LWEVLKGFSMENKKKFLKFVTGCSRGPLLGFRYLEPLFCIQRAGGNASEEALDRLPTSAT 61
L E+++ F ++ FL+FVTG R P G L P I R + S +A LP+ T
Sbjct: 1458 LLEIIREFDHGQRRAFLQFVTGTPRLPPGGLASLNPKLTIVRK--HCSNQADTDLPSVMT 1515
Query: 62 CMNLLKLPPYRSKEQMETKLLYAINADAG-FDLS 94
C N LKLPPY SKE+M+ KLLYAI G F LS
Sbjct: 1516 CANYLKLPPYSSKERMKEKLLYAITEGQGSFHLS 1549
>Medtr1g066940.7 | E3 ubiquitin-protein ligase | HC |
chr1:28781346-28771167 | 20130731
Length = 1549
Score = 73.2 bits (178), Expect = 5e-14, Method: Composition-based stats.
Identities = 43/94 (45%), Positives = 54/94 (57%), Gaps = 3/94 (3%)
Query: 2 LWEVLKGFSMENKKKFLKFVTGCSRGPLLGFRYLEPLFCIQRAGGNASEEALDRLPTSAT 61
L E+++ F ++ FL+FVTG R P G L P I R + S +A LP+ T
Sbjct: 1458 LLEIIREFDHGQRRAFLQFVTGTPRLPPGGLASLNPKLTIVRK--HCSNQADTDLPSVMT 1515
Query: 62 CMNLLKLPPYRSKEQMETKLLYAINADAG-FDLS 94
C N LKLPPY SKE+M+ KLLYAI G F LS
Sbjct: 1516 CANYLKLPPYSSKERMKEKLLYAITEGQGSFHLS 1549
>Medtr7g103210.2 | E3 ubiquitin-protein ligase | HC |
chr7:41732499-41722616 | 20130731
Length = 1092
Score = 61.6 bits (148), Expect = 1e-10, Method: Composition-based stats.
Identities = 25/43 (58%), Positives = 32/43 (74%)
Query: 1 MLWEVLKGFSMENKKKFLKFVTGCSRGPLLGFRYLEPLFCIQR 43
+ WEV+KGF + + LKFVT CSRGPLLGF+YL+P F I +
Sbjct: 1049 IFWEVIKGFEPKERCMLLKFVTSCSRGPLLGFKYLQPPFTIHK 1091
>Medtr1g066940.6 | E3 ubiquitin-protein ligase | HC |
chr1:28781572-28771195 | 20130731
Length = 1543
Score = 56.2 bits (134), Expect = 7e-09, Method: Composition-based stats.
Identities = 31/73 (42%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 2 LWEVLKGFSMENKKKFLKFVTGCSRGPLLGFRYLEPLFCIQRAGGNASEEALDRLPTSAT 61
L E+++ F ++ FL+FVTG R P G L P I R + S +A LP+ T
Sbjct: 1458 LLEIIREFDHGQRRAFLQFVTGTPRLPPGGLASLNPKLTIVRK--HCSNQADTDLPSVMT 1515
Query: 62 CMNLLKLPPYRSK 74
C N LKLPPY SK
Sbjct: 1516 CANYLKLPPYSSK 1528
>Medtr1g066940.4 | E3 ubiquitin-protein ligase | HC |
chr1:28781562-28771195 | 20130731
Length = 1543
Score = 56.2 bits (134), Expect = 7e-09, Method: Composition-based stats.
Identities = 31/73 (42%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 2 LWEVLKGFSMENKKKFLKFVTGCSRGPLLGFRYLEPLFCIQRAGGNASEEALDRLPTSAT 61
L E+++ F ++ FL+FVTG R P G L P I R + S +A LP+ T
Sbjct: 1458 LLEIIREFDHGQRRAFLQFVTGTPRLPPGGLASLNPKLTIVRK--HCSNQADTDLPSVMT 1515
Query: 62 CMNLLKLPPYRSK 74
C N LKLPPY SK
Sbjct: 1516 CANYLKLPPYSSK 1528