Miyakogusa Predicted Gene

Lj0g3v0269309.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0269309.2 Non Characterized Hit- tr|C5Z1J4|C5Z1J4_SORBI
Putative uncharacterized protein Sb10g011520
OS=Sorghu,44.34,2e-19,Dimer_Tnp_hAT,HAT dimerisation; HAT DIMERISATION
DOMAIN-CONTAINING PROTEIN,NULL; UNCHARACTERIZED,NUL,CUFF.17793.2
         (134 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g055005.1 | hypothetical protein | LC | chr1:24193861-2419...    49   2e-06

>Medtr1g055005.1 | hypothetical protein | LC |
          chr1:24193861-24193136 | 20130731
          Length = 194

 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/43 (48%), Positives = 31/43 (72%)

Query: 56 QIHTKKRNKLEHKRLEDLVFVKYNQELVRRYNIRDELDPISLD 98
          +IH+KKRN+LEH+ L+ L+FVKYNQ L       + +DP+ +D
Sbjct: 46 KIHSKKRNRLEHEMLQKLIFVKYNQTLKENCESDEYIDPVLMD 88