Miyakogusa Predicted Gene

Lj0g3v0268989.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0268989.1 Non Characterized Hit- tr|I3SUJ1|I3SUJ1_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,99.29,0,L
domain-like,NULL; LRR,Leucine-rich repeat; no description,NULL; U2
SMALL NUCLEAR RIBONUCLEOPROTEIN,CUFF.17777.1
         (280 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g004180.2 | U2 small nuclear ribonucleoprotein A | HC | ch...   472   e-133
Medtr6g004180.1 | U2 small nuclear ribonucleoprotein A | HC | ch...   472   e-133

>Medtr6g004180.2 | U2 small nuclear ribonucleoprotein A | HC |
           chr6:161626-156383 | 20130731
          Length = 275

 Score =  472 bits (1215), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 243/280 (86%), Positives = 255/280 (91%), Gaps = 5/280 (1%)

Query: 1   MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTLDLSDNEIVKLENI 60
           MVRLTADLIWKSPHFFN IKERELDLRGNKI+VIENLGATEDQFDT+DLSDNEIVKLEN+
Sbjct: 1   MVRLTADLIWKSPHFFNTIKERELDLRGNKISVIENLGATEDQFDTVDLSDNEIVKLENL 60

Query: 61  PYLNRLGTLLINNNRVTRINPNIGEFLPNLHTLVLTNNRIVNLVEIDPLASLPKLQFLSL 120
           P LNRLGTLLINNNR+TRINPNIGEFLPNLHTLVLTNNRIVNLVEIDPL SLPKLQFLSL
Sbjct: 61  PNLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRIVNLVEIDPLTSLPKLQFLSL 120

Query: 121 LDNNITKKPNYRLYVISKLDSLRVLDFKKVKNKERLEAKNLFGSEEAIENAQKTPVKTIS 180
           LDNNITKK NYRLYVI KL SLRVLDFKKVK+KERLEAKNLF S+EAIE AQ TP    +
Sbjct: 121 LDNNITKKVNYRLYVIHKLKSLRVLDFKKVKDKERLEAKNLFESKEAIEEAQNTP----A 176

Query: 181 PAETPDVSEATEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKALKSGLLPEDLK 240
           P ETPDVSEATEEQQTPKV APTPEQIIAIKAAIV+SQTLEEVARLEKALKSG LP DLK
Sbjct: 177 PVETPDVSEATEEQQTPKVTAPTPEQIIAIKAAIVSSQTLEEVARLEKALKSGQLPADLK 236

Query: 241 SLNGNVTLDNVNEKGEDVVHDESNDTREQKNTDSAAMEQD 280
           SL  N+ +DNVNEK +DVV DES DT+EQ NTDS AMEQD
Sbjct: 237 SLTDNIMIDNVNEK-QDVVPDESKDTQEQSNTDSTAMEQD 275


>Medtr6g004180.1 | U2 small nuclear ribonucleoprotein A | HC |
           chr6:160835-156691 | 20130731
          Length = 308

 Score =  472 bits (1214), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 243/280 (86%), Positives = 255/280 (91%), Gaps = 5/280 (1%)

Query: 1   MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTLDLSDNEIVKLENI 60
           MVRLTADLIWKSPHFFN IKERELDLRGNKI+VIENLGATEDQFDT+DLSDNEIVKLEN+
Sbjct: 34  MVRLTADLIWKSPHFFNTIKERELDLRGNKISVIENLGATEDQFDTVDLSDNEIVKLENL 93

Query: 61  PYLNRLGTLLINNNRVTRINPNIGEFLPNLHTLVLTNNRIVNLVEIDPLASLPKLQFLSL 120
           P LNRLGTLLINNNR+TRINPNIGEFLPNLHTLVLTNNRIVNLVEIDPL SLPKLQFLSL
Sbjct: 94  PNLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRIVNLVEIDPLTSLPKLQFLSL 153

Query: 121 LDNNITKKPNYRLYVISKLDSLRVLDFKKVKNKERLEAKNLFGSEEAIENAQKTPVKTIS 180
           LDNNITKK NYRLYVI KL SLRVLDFKKVK+KERLEAKNLF S+EAIE AQ TP    +
Sbjct: 154 LDNNITKKVNYRLYVIHKLKSLRVLDFKKVKDKERLEAKNLFESKEAIEEAQNTP----A 209

Query: 181 PAETPDVSEATEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKALKSGLLPEDLK 240
           P ETPDVSEATEEQQTPKV APTPEQIIAIKAAIV+SQTLEEVARLEKALKSG LP DLK
Sbjct: 210 PVETPDVSEATEEQQTPKVTAPTPEQIIAIKAAIVSSQTLEEVARLEKALKSGQLPADLK 269

Query: 241 SLNGNVTLDNVNEKGEDVVHDESNDTREQKNTDSAAMEQD 280
           SL  N+ +DNVNEK +DVV DES DT+EQ NTDS AMEQD
Sbjct: 270 SLTDNIMIDNVNEK-QDVVPDESKDTQEQSNTDSTAMEQD 308