Miyakogusa Predicted Gene
- Lj0g3v0268949.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0268949.1 tr|B9I2M0|B9I2M0_POPTR Predicted protein
(Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_892121
PE=4,33.85,2e-18,STRUCTURAL CONSTITUENT OF RIBOSOME,NULL; 60S
RIBOSOMAL PROTEIN L34,Ribosomal protein L34Ae; seg,NULL,CUFF.17767.1
(569 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr7g010160.1 | DUF1666 family protein | HC | chr7:2428673-242... 675 0.0
Medtr5g040600.1 | transmembrane protein, putative | HC | chr5:17... 320 2e-87
Medtr8g467380.1 | transmembrane protein, putative | HC | chr8:24... 215 8e-56
Medtr8g467390.1 | DUF1666 family protein | LC | chr8:24215397-24... 143 6e-34
Medtr4g005350.1 | DUF1666 family protein | HC | chr4:219435-2154... 125 8e-29
Medtr6g084440.2 | DUF1666 family protein | HC | chr6:31613376-31... 100 4e-21
Medtr6g084440.1 | DUF1666 family protein | HC | chr6:31613376-31... 97 4e-20
Medtr8g104270.1 | DUF1666 family protein | HC | chr8:43907131-43... 74 3e-13
Medtr8g467400.1 | 60S ribosomal protein L34, putative | LC | chr... 55 3e-07
>Medtr7g010160.1 | DUF1666 family protein | HC |
chr7:2428673-2422982 | 20130731
Length = 745
Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/569 (66%), Positives = 421/569 (73%), Gaps = 44/569 (7%)
Query: 8 VVDAENHVNVTESVHKEEVSLEKLKTVLSVEQQSLQPVTRNFLXXXXXXXXXXXXXXXXX 67
VV+ + N +E++ +E+VS +KLK + +P RNFL
Sbjct: 214 VVNGKIDDNFSENLREEDVS-DKLKNLR-------EPCVRNFLSDDDFICSSSDTDSISS 265
Query: 68 XXXGFLSDTDFGTTTEIDTLGNNEEENAGLTEEDLDFWDE----NLDIGYEPDDFAEEDE 123
GFLSDTDFGTTT+ DTLGNNEEEN EDLDF DE +LD GYEPDDF EEDE
Sbjct: 266 LDDGFLSDTDFGTTTDFDTLGNNEEENV----EDLDFKDEESIESLDFGYEPDDFGEEDE 321
Query: 124 DIMEELGKIEEECRLEKSSGDSFQDSIKSKPENSVEPNSLNLTANDLEDSNRFDTLWEHQ 183
DIM ELGK+EEE R E+S ++ NS +LTA DL++SNRFDTLWEHQ
Sbjct: 322 DIMNELGKLEEEIRQEES----------------LKQNSKSLTAFDLDESNRFDTLWEHQ 365
Query: 184 DLIEQLKMELKKVRATGLPTILEDSESPRIMEDLKPWKIDEKFQHGS-TKNELPKFYKSY 242
DLIEQLKMELKKV+ATGLPTI EDSESPRIMEDLKPWKIDEKFQ GS T NELPKFY+SY
Sbjct: 366 DLIEQLKMELKKVKATGLPTIFEDSESPRIMEDLKPWKIDEKFQQGSSTTNELPKFYRSY 425
Query: 243 RERMRKFDILNYQKMYALVSWKLAGFLQSKDPLQSFSTHKXXXXXXXXXXXXXRGFHIYR 302
RERMRKFDILNYQKMYAL G ++SKDPL+SFS HK RG + +
Sbjct: 426 RERMRKFDILNYQKMYAL------GLMKSKDPLKSFSIHKKSSSTITCILP--RGINSFF 477
Query: 303 RRKIEAAHDPTKKFMRELYCDLETVYVGHLCLSWEFLQWEYGKALELWESDGYGMRRFNE 362
RR DP KKF+RELY DLE VYVGHLCLSWEFL WEY KAL++WESD YG+RRFNE
Sbjct: 478 RRNRNIDADPMKKFIRELYSDLEMVYVGHLCLSWEFLHWEYEKALKIWESDQYGLRRFNE 537
Query: 363 VAGEFQQFQVLLQRFMENELFQCPRVENYARNRCAMKNLLQVPVIREDNAKDKKKYRERE 422
VAGEFQQFQVLLQRF+ENE FQ PRVENYARNRCAMK LLQVPVI+ED KDKKKYR+RE
Sbjct: 538 VAGEFQQFQVLLQRFIENEPFQGPRVENYARNRCAMKKLLQVPVIKEDKGKDKKKYRKRE 597
Query: 423 ADKDAITSGMLVEVLEESIRTIWRFIRADKDASSL--KGAREKQVELQDPSDSELLVEIR 480
D DAITS MLVE+LEESIRTIWRFIR D+DAS+L K +E+ VELQDP+DS+LLVEI
Sbjct: 598 VDNDAITSDMLVEILEESIRTIWRFIRGDEDASNLTIKCLKEQHVELQDPADSQLLVEIL 657
Query: 481 TXXXXXXXXXXXXXXSGCCILKKFQKHHEDGTDQVLYFFSQVDMKLVWRVLNMSRITTDQ 540
T SG CILKKF+K HED TD VLYFFSQVD+KLV RVLNMSRITTDQ
Sbjct: 658 TDLQKKEKRLREVLRSGSCILKKFKK-HEDETDPVLYFFSQVDLKLVCRVLNMSRITTDQ 716
Query: 541 LAWCRSKLNKINFVNRRIQVEPSFLLFPS 569
LAWCRSKLNKINFVNRRI VEPSFLLFP+
Sbjct: 717 LAWCRSKLNKINFVNRRIHVEPSFLLFPN 745
>Medtr5g040600.1 | transmembrane protein, putative | HC |
chr5:17838417-17832271 | 20130731
Length = 909
Score = 320 bits (820), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 177/412 (42%), Positives = 252/412 (61%), Gaps = 38/412 (9%)
Query: 172 DSNRFDTLWEHQDLIEQLKMELKKVRATGLPTILEDSE-----------SPRIMEDLKPW 220
+S+ D WEH++++EQLK+ELK R GL TI+E+ E SP+++E+LKP
Sbjct: 520 ESDEDDFEWEHEEIVEQLKLELKNSRQGGLATIIEEVEDEEEQEQEEKESPKVVEELKPL 579
Query: 221 KIDEKFQHGSTKNELPKFYKSYRERMRKFDILNYQKMYALVSWKLAGFLQSKDPLQSFST 280
KI+ K + +++ K YKSY E+MRK DILNYQ M+AL G LQ KDPL+ S
Sbjct: 580 KIEVKLEFKDQMDQIEKVYKSYAEKMRKLDILNYQTMHAL------GLLQLKDPLKLISI 633
Query: 281 HKXXXXXXXXXXXXXRGFHIYRRRKIEAAHDPTKKFMRELYCDLETVYVGHLCLSWEFLQ 340
K +++ R+ + DP K + +L+ DLE VYVG +CLSWE L
Sbjct: 634 PKSTISNGIISQ------NLWPRKSTKITSDPFLKLVHQLHRDLELVYVGQICLSWEILC 687
Query: 341 WEYGKALELWESDGYGMRRFNEVAGEFQQFQVLLQRFMENELFQ-CPRVENYARNRCAMK 399
W + KA+EL + D R+N VAGEFQ FQVL+QRF+ENE FQ PR++NY +NRC ++
Sbjct: 688 WLHMKAIELQQYDSQRSHRYNHVAGEFQLFQVLMQRFIENEPFQGGPRIQNYVKNRCVIR 747
Query: 400 NLLQVPVIREDNAKDKKKYREREADKDAITSGMLVEVLEESIRTIWRFIRADKDASSLKG 459
NLL VP I++D + ++D I SG L ++++ES+R W F+R DKD ++
Sbjct: 748 NLLHVPAIKDDI---------KGGEEDPIASGRLQDIIKESMRVFWEFVRTDKDNGNV-N 797
Query: 460 AREKQV--ELQDPSDSELLVEIRTXXXXXXXXXXXXXXSGCCILKKFQKHHEDGTDQVLY 517
KQ+ +L+DP+ + LLV+IR +G CI+KKFQKHHED D
Sbjct: 798 VISKQIGSDLKDPAIANLLVDIRIQLQKKDKKLKDIVRTGNCIVKKFQKHHEDQLDHE-Q 856
Query: 518 FFSQVDMKLVWRVLNMSRITTDQLAWCRSKLNKINFVNRRI-QVEPSFLLFP 568
+QV ++L+ RV+NMS++ +Q+ WC KLN+I F++R+I VEPSFLLFP
Sbjct: 857 LVAQVGLRLISRVINMSQLRKEQVLWCSEKLNRIKFLSRKIVHVEPSFLLFP 908
>Medtr8g467380.1 | transmembrane protein, putative | HC |
chr8:24203821-24210537 | 20130731
Length = 829
Score = 215 bits (548), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 143/383 (37%), Positives = 217/383 (56%), Gaps = 32/383 (8%)
Query: 185 LIEQLKMELKKVRATGLPTILEDS------ESPRIMEDLKPWKIDEKFQHGSTKNELPKF 238
++EQ+K+ELK R GL TILE+ S + E +KP I+EK ++ E+ K
Sbjct: 452 VMEQIKLELKNARQGGLATILEEEEEEREYSSKVVEEKIKPLSIEEKMEYKDHIVEIQKV 511
Query: 239 YKSYRERMRKFDILNYQKMYALVSWKLAGFLQSKDPLQSFSTHKXXXXXXXXXXXXXRGF 298
Y Y ++++K D+LN+Q M+A+ G LQ KDP + F K
Sbjct: 512 YNCYAQKIKKLDVLNFQAMHAI------GLLQLKDPPKLFLMQKSTVQQVKPLVIPQ--- 562
Query: 299 HIYRRRKIEAAHDPTKKFMRELYCDLETVYVGHLCLSWEFLQWEYGKALELWESDGYGMR 358
+++ R+ + DP K + EL+ DLE VYVG +CLSWE L W++ K EL + D R
Sbjct: 563 NLWPRKAQKNKIDPMLKLVNELHRDLEIVYVGQICLSWEILCWQHEKIKELKKYDSPRPR 622
Query: 359 RFNEVAGEFQQFQVLLQRFMENELF-QCPRVENYARNRCAMKNLLQVPVIREDNAKDKKK 417
R+N +AGEFQ FQVL+QRF+E+E F Q RV+NY +NRC ++NLLQVP+I++ K K
Sbjct: 623 RYNLIAGEFQLFQVLMQRFLEDEPFRQDHRVQNYVKNRCVIRNLLQVPIIKD--DSTKDK 680
Query: 418 YREREADKDAITSGMLVEVLEESIRTIWRFIRADKDASSLKGA---REKQVELQDPSDSE 474
+ + ++D I S L +++++S++ W+F+RADKD ++ K+ E++D SE
Sbjct: 681 KKIKWGEEDGIASERLEQIIKKSMQVFWKFVRADKDDDNVFHKVFHHHKENEVKDTEISE 740
Query: 475 LLVEIRTXXXXXXXXXXXXXXSGCCILKKFQKHHEDGTDQVLY--FFSQVDMKLVWRV-- 530
LL +I+ SG CI++KFQKH+ED Q+ + F +QV ++L+ +V
Sbjct: 741 LLRDIQIQLNKKERKLKERLRSGNCIVRKFQKHNEDQI-QLDHEQFLAQVGLRLISKVER 799
Query: 531 --LNMSRITTDQLAW----CRSK 547
LN R Q W CRS+
Sbjct: 800 LALNKCRSDHSQRLWRRQRCRSR 822
>Medtr8g467390.1 | DUF1666 family protein | LC |
chr8:24215397-24217284 | 20130731
Length = 363
Score = 143 bits (360), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 102/305 (33%), Positives = 166/305 (54%), Gaps = 21/305 (6%)
Query: 185 LIEQLKMELKKVRATGLPTILEDSESPRIM-------EDLKPWKIDEKFQHGSTKNELPK 237
LI+++K L+ + GL TI E+ E E +K + +K ++ E K
Sbjct: 70 LIKRIKFNLRSRKQGGLGTIGEEEEDGEREYHLKVFEEKMKSFSFGKKMEYKDHIVENLK 129
Query: 238 FYKSYRERMRKFDILNYQKMYALVSWKLAGFLQSKDPLQSFSTHKXXXXXXXXXXXXXRG 297
Y+ Y+++MRK D+ NYQ +YA+ LQ K+P + K
Sbjct: 130 VYRCYQQKMRKLDVFNYQALYAI------DLLQLKEPSKLILVRKSTLQHGKPQVIPH-- 181
Query: 298 FHIYRRRKIEAAHDPTKKFMRELYCDLETVYVGHLCLSWEFLQWEYGKALELWESDGYGM 357
+++ R + +DP K + EL DLE VYVG +CLSWE L W++ K EL + D +
Sbjct: 182 -YLWSRTAQKNTYDPMLKRVDELNKDLELVYVGQICLSWEMLCWQHEKIKELKQYDLPWL 240
Query: 358 RRFNEVAGEFQQFQVLLQRFMENE-LFQCPRVENYARNRCAMKNLLQVPVIREDNAKDKK 416
R +N+VA EF FQ L+QRF+E + + Q R++NY +NR ++NLLQVP + +D+ K+KK
Sbjct: 241 RSYNQVAAEFLHFQALIQRFLEEDPIQQGHRIQNYVKNRSLVRNLLQVPPLIDDSTKEKK 300
Query: 417 KYREREADKDAITSGMLVEVLEESIRTIWRFIRADKDASSL--KGAREKQVELQDPSDSE 474
+ + ++DAI+ L ++++ES++ F+ DKD S+ + + K EL++ E
Sbjct: 301 EIAWGD-EEDAISIERLEQIIKESMQVFLEFV-GDKDDGSVFHRVSHHKGNELKEEDILE 358
Query: 475 LLVEI 479
LL +I
Sbjct: 359 LLGDI 363
>Medtr4g005350.1 | DUF1666 family protein | HC | chr4:219435-215465
| 20130731
Length = 425
Score = 125 bits (315), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 124/251 (49%), Gaps = 21/251 (8%)
Query: 321 YCDLETVYVGHLCLSWEFLQWEYGKALELWESDGYGMRRFNEVAGEFQQFQVLLQRFMEN 380
Y D+ET YVG +CL+WE L +Y ++ A EFQQFQVLLQRF+EN
Sbjct: 192 YLDIETAYVGQICLTWEALHCQYSHMSYKISWQHENPTCYSRSAQEFQQFQVLLQRFIEN 251
Query: 381 ELF-QCPRVENYARNRCAMKNLLQVPVIREDNAK--DKKKYREREADKDAITSGMLVEVL 437
E F Q PR E YAR+R + LLQVP IR + + D+ R D L+ ++
Sbjct: 252 EPFEQGPRPEIYARSRNTLPKLLQVPNIRGSDHEITDESDIRVLAPD--------LIRII 303
Query: 438 EESIRTIWRFIRADKDASSLKGAREKQVELQDPSDSELLVEIRTXXXXXXXXXXXXXXSG 497
E SI T F++ DK SS+ Q +L P L ++++ G
Sbjct: 304 ENSILTFRLFLKRDKKKSSVINLFGNQNQLATP-----LQQVQSTLEKKVVKLKELRKKG 358
Query: 498 CCILKKFQKHHEDGTDQVLYFFSQVDMKLVWRVLNMSRITTDQLAWCRSKLNKINFVNRR 557
QKH + V +D K++ RVL M+R+T +QL WC K+ K++ N R
Sbjct: 359 WRKNSWPQKHED-----VQLLLGLIDAKILSRVLRMTRMTREQLFWCEEKMKKLDLSNNR 413
Query: 558 IQVEPSFLLFP 568
++ +P +LFP
Sbjct: 414 LERDPCPILFP 424
>Medtr6g084440.2 | DUF1666 family protein | HC |
chr6:31613376-31617656 | 20130731
Length = 602
Score = 100 bits (249), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 85/267 (31%), Positives = 134/267 (50%), Gaps = 26/267 (9%)
Query: 307 EAAHDPTKKFMRELYCDLETVYVGHLCLSWEFLQWEYGKALELWESDGYGMRRFNEVAGE 366
+ +H+P YC+LE YV +CL+WE L W Y K + + + +A +
Sbjct: 357 DISHNP--------YCELEGAYVAQICLTWEALNWNY-KNFQTKRASNVDVGCPATIAQQ 407
Query: 367 FQQFQVLLQRFMENELFQCPR-VENYARNRCAMKNLLQVPVIREDNAKDKKKYREREADK 425
FQQFQVLLQR++ENE ++ R E YAR R LL VP R+D+ K+ + +
Sbjct: 408 FQQFQVLLQRYVENEPYEFGRRPEIYARMRHMAPKLLLVPEYRDDDQKENIGFNTK---- 463
Query: 426 DAITSGMLVEVLEESIRTIWRFIRADKDASSLKGA---REKQVELQDPSDSELLVEIRTX 482
I+S + ++E+ IRT F++ADK+ A R Q L DP+ L+ ++
Sbjct: 464 --ISSASFLVIMEDGIRTFMNFLKADKEKPCQILASYFRRNQRGLVDPT---LIRLLKKV 518
Query: 483 XXXXXXXXXXXXXSGCCILKKFQKHHEDGTDQVLYFFSQVDMKLVWRVLNMSRITTDQLA 542
S C+ K+ K E ++ + +D+KLV RVL MS + +QL
Sbjct: 519 NQKKKIKIKDLRRSHKCLRKRNLKEEE----EMEILMALIDLKLVSRVLRMSDMNENQLH 574
Query: 543 WCRSKLNKINFVNRRIQVEPSFLLFPS 569
WC K +K+ ++ ++Q + + L FPS
Sbjct: 575 WCEEKNSKVRVIDGKLQRDSTPLFFPS 601
>Medtr6g084440.1 | DUF1666 family protein | HC |
chr6:31613376-31617663 | 20130731
Length = 604
Score = 97.1 bits (240), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 84/253 (33%), Positives = 126/253 (49%), Gaps = 16/253 (6%)
Query: 321 YCDLETVYVGHLCLSWEFLQWEYGKALELWESDGYGMRRFNEVAGEFQQFQVLLQRFMEN 380
YC+LE YV +CL+WE L W Y K + + + +A +FQQFQVLLQR++EN
Sbjct: 363 YCELEGAYVAQICLTWEALNWNY-KNFQTKRASNVDVGCPATIAQQFQQFQVLLQRYVEN 421
Query: 381 ELFQCPR-VENYARNRCAMKNLLQVPVIREDNAKDKKKYREREADKDAITSGMLVEVLEE 439
E ++ R E YAR R LL VP RE + K E I+S + ++E+
Sbjct: 422 EPYEFGRRPEIYARMRHMAPKLLLVPEYRESDDDQK----ENIGFNTKISSASFLVIMED 477
Query: 440 SIRTIWRFIRADKDASSLKGA---REKQVELQDPSDSELLVEIRTXXXXXXXXXXXXXXS 496
IRT F++ADK+ A R Q L DP+ L+ ++ S
Sbjct: 478 GIRTFMNFLKADKEKPCQILASYFRRNQRGLVDPT---LIRLLKKVNQKKKIKIKDLRRS 534
Query: 497 GCCILKKFQKHHEDGTDQVLYFFSQVDMKLVWRVLNMSRITTDQLAWCRSKLNKINFVNR 556
C+ K+ K E ++ + +D+KLV RVL MS + +QL WC K +K+ ++
Sbjct: 535 HKCLRKRNLKEEE----EMEILMALIDLKLVSRVLRMSDMNENQLHWCEEKNSKVRVIDG 590
Query: 557 RIQVEPSFLLFPS 569
++Q + + L FPS
Sbjct: 591 KLQRDSTPLFFPS 603
>Medtr8g104270.1 | DUF1666 family protein | HC |
chr8:43907131-43910645 | 20130731
Length = 563
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 77/281 (27%), Positives = 126/281 (44%), Gaps = 40/281 (14%)
Query: 303 RRKIEAAHDPTKKFMRELYCDLETVYVGHLCLSWEFLQWEYGKALELWESDG---YGMRR 359
++ + H+P Y +LE YV +CL+WE L W Y S + +
Sbjct: 308 KKPTDVGHNP--------YSELEAAYVAQICLTWEALSWNYTNFRYKHASQSRHDFDIGC 359
Query: 360 FNEVAGEFQQFQVLLQRFMENELFQ-CPRVENYARNRCAMKNLLQVPVIREDNAKDKKKY 418
+A +FQQFQVLLQR++ENE ++ R E YAR R LL VP +Y
Sbjct: 360 PATIAQQFQQFQVLLQRYVENEPYEHGRRPEIYARMRLLAPKLLLVP-----------EY 408
Query: 419 REREADK------DAITSGMLVEVLEESIRTIWRFIRADKDASS---LKGAREKQVELQD 469
+ E D+ I+S ++++E IRT F++ DK+ S R + + D
Sbjct: 409 HDSEEDQMDSDFHSKISSASFLKIMEGGIRTFMNFLKTDKEKSCQILTYYFRRNKRGMVD 468
Query: 470 PSDSELLVEIRTXXXXXXXXXXXXXXSGCCILKKFQKHHEDGTDQVLYFFSQVDMKLVWR 529
P+ +L+ ++ + K +K +++ +D+K+V R
Sbjct: 469 PTLLKLMKKVNQKKRVKVKDLSH-------LGKGLRKRKLKVEEEIEILMGLIDLKVVSR 521
Query: 530 VLNMSRITTDQLAWCRSKLNKINFVNRRIQVEPSF-LLFPS 569
VL M ++ QL WC K++K+ V ++ + S L FPS
Sbjct: 522 VLRMKELSEQQLHWCEKKMSKVRVVEGKLCRDYSTPLFFPS 562
>Medtr8g467400.1 | 60S ribosomal protein L34, putative | LC |
chr8:24217888-24218043 | 20130731
Length = 51
Score = 54.7 bits (130), Expect = 3e-07, Method: Composition-based stats.
Identities = 22/49 (44%), Positives = 36/49 (73%)
Query: 520 SQVDMKLVWRVLNMSRITTDQLAWCRSKLNKINFVNRRIQVEPSFLLFP 568
+QV ++L+ +V+NM ++ D L WC KL ++ FV+R+I++E S LLFP
Sbjct: 2 AQVGLRLISKVINMKKLRKDHLIWCSEKLKQMKFVDRKIKMEYSILLFP 50