Miyakogusa Predicted Gene

Lj0g3v0268859.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0268859.2 Non Characterized Hit- tr|I1LMP2|I1LMP2_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.57091 PE,95.79,0,26S
PROTEASOME NON-ATPASE REGULATORY SUBUNIT 7,NULL; EUKARYOTIC
TRANSLATION INITIATION FACTOR 3 SUBU,CUFF.17763.2
         (310 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g070180.1 | 26S proteasome regulatory particle non-ATPase ...   597   e-171
Medtr5g081980.1 | 26S proteasome regulatory particle non-ATPase ...   593   e-170
Medtr3g070190.1 | eukaryotic translation initiation factor 3 sub...   127   2e-29
Medtr5g082000.1 | eukaryotic translation initiation factor 3 sub...   116   3e-26
Medtr3g009270.1 | COP9 signalosome complex subunit 6a | HC | chr...    97   3e-20

>Medtr3g070180.1 | 26S proteasome regulatory particle non-ATPase
           subunit 8 | HC | chr3:31447973-31442165 | 20130731
          Length = 309

 Score =  597 bits (1538), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 292/300 (97%), Positives = 297/300 (99%)

Query: 1   MDVIKTQQISSRAIEKVVVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVTNS 60
           MDVIKTQQISSR+IEKVVVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGS+FKGTVDV+NS
Sbjct: 1   MDVIKTQQISSRSIEKVVVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSTFKGTVDVSNS 60

Query: 61  YAVPFEEDDKDPSIWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPKLRENDLDVHGLFN 120
           YAVPFEEDDKDPSIWFLDHNYHE+MFSMFKRINAKEHVVGWYSTGPKLRENDLD+HGLFN
Sbjct: 61  YAVPFEEDDKDPSIWFLDHNYHEAMFSMFKRINAKEHVVGWYSTGPKLRENDLDIHGLFN 120

Query: 121 DYVPNPVLVIIDVEPKELGIPTKAYYTVEEVKENATQKSQKVFVHVQSEIAAHEVEEIGV 180
           DYVPNPVLVIIDVEPKELGIPTKAYY VEEVKENATQKSQKVFVHVQSEIAAHEVEEIGV
Sbjct: 121 DYVPNPVLVIIDVEPKELGIPTKAYYAVEEVKENATQKSQKVFVHVQSEIAAHEVEEIGV 180

Query: 181 EHLLRDVKDTTISTLATEVSAKLTALKGLDARLKEIRSYLDLVIDGKLPLNHEILYHLQD 240
           EHLLRDVKDTTISTLATEVS KLTALKGLDARLKEIR YLDLVIDGKLPLNHEILYHLQD
Sbjct: 181 EHLLRDVKDTTISTLATEVSGKLTALKGLDARLKEIRGYLDLVIDGKLPLNHEILYHLQD 240

Query: 241 VFNLLPNLNVSDLIKAFAVKTNDMMLVIYLSSLIRSVIALHNLINNKMLNKEHERAEDSK 300
           VFNLLPNLNVSDLIKAFAVKTNDMMLVIYLSSLIRSVIALHNLINNKMLNKEHERAEDSK
Sbjct: 241 VFNLLPNLNVSDLIKAFAVKTNDMMLVIYLSSLIRSVIALHNLINNKMLNKEHERAEDSK 300


>Medtr5g081980.1 | 26S proteasome regulatory particle non-ATPase
           subunit 8 | HC | chr5:35180311-35175443 | 20130731
          Length = 310

 Score =  593 bits (1530), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 292/300 (97%), Positives = 295/300 (98%)

Query: 1   MDVIKTQQISSRAIEKVVVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVTNS 60
           MDVIKTQQIS RAIEKVVVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVD+TNS
Sbjct: 1   MDVIKTQQISWRAIEKVVVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDITNS 60

Query: 61  YAVPFEEDDKDPSIWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPKLRENDLDVHGLFN 120
           YAVPFEEDDKDPSIWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPKLRENDLD+H LFN
Sbjct: 61  YAVPFEEDDKDPSIWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPKLRENDLDIHALFN 120

Query: 121 DYVPNPVLVIIDVEPKELGIPTKAYYTVEEVKENATQKSQKVFVHVQSEIAAHEVEEIGV 180
           DYVPNPVLVIIDVEPKELGIPTKAYY VEEVKENATQKSQKVFVHVQSEIAAHEVEEIGV
Sbjct: 121 DYVPNPVLVIIDVEPKELGIPTKAYYAVEEVKENATQKSQKVFVHVQSEIAAHEVEEIGV 180

Query: 181 EHLLRDVKDTTISTLATEVSAKLTALKGLDARLKEIRSYLDLVIDGKLPLNHEILYHLQD 240
           EHLLRDVKDTTISTLATEVSAKLTALKGLDARLKEIRSYLDLVIDGKLPLNHEILYHLQD
Sbjct: 181 EHLLRDVKDTTISTLATEVSAKLTALKGLDARLKEIRSYLDLVIDGKLPLNHEILYHLQD 240

Query: 241 VFNLLPNLNVSDLIKAFAVKTNDMMLVIYLSSLIRSVIALHNLINNKMLNKEHERAEDSK 300
           VFNLLPNLNV+DLIKAFAVKTND MLVIYLSSLIRSVIALHNLINNKMLNKEHER EDSK
Sbjct: 241 VFNLLPNLNVTDLIKAFAVKTNDQMLVIYLSSLIRSVIALHNLINNKMLNKEHEREEDSK 300


>Medtr3g070190.1 | eukaryotic translation initiation factor 3
           subunit F | HC | chr3:31455221-31449668 | 20130731
          Length = 288

 Score =  127 bits (318), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 88/271 (32%), Positives = 140/271 (51%), Gaps = 17/271 (6%)

Query: 19  VHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFK-GTVDVTNSYAVPFEEDDKDPSIWFL 77
           VHPLV+ +I D Y R   D  +RV+G LLGS    GTVD+ NSYAVP  E     +   L
Sbjct: 25  VHPLVVFNICDCYVR-RPDQAERVIGTLLGSVLPDGTVDIRNSYAVPHNESVDQVA---L 80

Query: 78  DHNYHESMFSMFKRINAKEHVVGWYSTGPKLRENDLDVHGLFNDYVPNPVLVIIDVEPKE 137
           D  YH +M    +++N KE +VGWYSTG  +      +H  ++  VPNP+ + +D     
Sbjct: 81  DIEYHHNMLLSHQKVNQKEIIVGWYSTGLGVTGGSALIHEFYSREVPNPIHLTVDTGFTA 140

Query: 138 LGIPTKAYYTVEEVKENATQKSQKVFVHVQS---EIAAHEVEEIGVEHLLRDVKDTTIST 194
            G   KAY     V  N +   +++    Q    ++   E E IG + L    K TT+  
Sbjct: 141 GGGTIKAY-----VSNNLSLGDRQIAAQFQEIPLDLRMVEAERIGFDIL----KATTVDK 191

Query: 195 LATEVSAKLTALKGLDARLKEIRSYLDLVIDGKLPLNHEILYHLQDVFNLLPNLNVSDLI 254
           + +++     +++ L A + +I  Y+D V++G++  +++I   + D    LP L  SD  
Sbjct: 192 IPSDLEGMEASMEHLLALINDIYKYVDDVVEGRVAPDNKIGKFISDAVGSLPKLPPSDFD 251

Query: 255 KAFAVKTNDMMLVIYLSSLIRSVIALHNLIN 285
           K       D +L++YLSS+ R+ ++L   +N
Sbjct: 252 KLVNDSLQDHLLMVYLSSITRTQLSLAEKLN 282


>Medtr5g082000.1 | eukaryotic translation initiation factor 3
           subunit F | HC | chr5:35199821-35195812 | 20130731
          Length = 284

 Score =  116 bits (291), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 86/282 (30%), Positives = 139/282 (49%), Gaps = 17/282 (6%)

Query: 8   QISSRAIEKVVVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFK-GTVDVTNSYAVPFE 66
           Q SS       VHPLV+ +I D Y R   D  +RV+G LLGS    GTVD+ NSYAVP  
Sbjct: 10  QFSSSQTLSGKVHPLVIFNICDCYVR-RPDQAERVIGTLLGSVLPDGTVDIRNSYAVPHN 68

Query: 67  EDDKDPSIWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPKLRENDLDVHGLFNDYVPNP 126
           E     +   LD  YH +M    +++N KE +VGWYSTG  +      +H  ++  V NP
Sbjct: 69  ESVDQVA---LDIEYHHNMLLSHQKVNPKEVIVGWYSTGLGVTGGSALIHEFYSREVSNP 125

Query: 127 VLVIIDVEPKELGIPTKAYYTVEEVKENATQKSQKVFVHVQS---EIAAHEVEEIGVEHL 183
           + + +D    +     KAY     V  N +   Q++    Q    ++   E E IG ++L
Sbjct: 126 IHLTVDTGFADGEGAIKAY-----VSNNLSLGDQQIAAQFQEIPLDLRMVEAERIGFDNL 180

Query: 184 LRDVKDTTISTLATEVSAKLTALKGLDARLKEIRSYLDLVIDGKLPLNHEILYHLQDVFN 243
               K T++  + +++     ++  L A + +   Y+D V++G++  +++I   + DV  
Sbjct: 181 ----KSTSVDKIPSDLEGMEASMTHLLALVDDTYKYVDDVVEGRVDPDNKIGKCISDVVG 236

Query: 244 LLPNLNVSDLIKAFAVKTNDMMLVIYLSSLIRSVIALHNLIN 285
            LP +      K       D +L++YLSS+ R+ + L   +N
Sbjct: 237 SLPKIPSLAFDKLVNDSLQDHLLMVYLSSITRTQLGLAEKLN 278


>Medtr3g009270.1 | COP9 signalosome complex subunit 6a | HC |
           chr3:1917695-1909047 | 20130731
          Length = 318

 Score = 96.7 bits (239), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 138/296 (46%), Gaps = 38/296 (12%)

Query: 19  VHPLVLLSIVDNYNRVAKDTRK-----------------------RVVGVLLGSSFKGTV 55
           +HPLV+++I D+Y RV                             RV G ++G     TV
Sbjct: 13  LHPLVIVNISDHYTRVKSQMNPTLAPHNNATNNGGDGVVSSLPPPRVFGCVIGVQKGRTV 72

Query: 56  DVTNSYAVPFEEDDKDPSIWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPKLRENDLDV 115
           ++ NS+ + +     DPS   LD  + E    ++K++    +++GWYSTG    E+D+ +
Sbjct: 73  EIFNSFELLY-----DPSTHSLDRPFLEKKQELYKKVFPHFYILGWYSTGSDAEESDMHI 127

Query: 116 HGLFNDYVPNPVLVIID--VEPKELGIPTKAYYTVEEVKENATQKSQKVFVHVQSEIAAH 173
           H    D   +PV V+++  +   +  +P   + +   V +      Q +FV     I   
Sbjct: 128 HKALMDINESPVYVLLNPAINHSQKDLPVSIFESELHVIDGIP---QLIFVRSSYTIETV 184

Query: 174 EVEEIGVEHLLRDVKDTTISTLATEVSAKLT----ALKGLDARLKEIRSYLDLVIDGKLP 229
           E E I V+H+   +K +   + AT+++A LT    A+K L +R+K +  YL  +  G +P
Sbjct: 185 EAERISVDHVAH-LKPSDGGSAATQLAANLTGIHSAIKMLHSRIKVLHHYLLAMEKGDVP 243

Query: 230 LNHEILYHLQDVFNLLPNLNVSDLIKAFAVKTNDMMLVIYLSSLIRSVIALHNLIN 285
             + +L  +  +   LP +        F ++ ND +L+ YL+ L     A+++L++
Sbjct: 244 CENSLLRQVSSLLRRLPAIESGKFQDDFLMEYNDTLLISYLAMLTNCSSAMNDLVD 299