Miyakogusa Predicted Gene

Lj0g3v0268839.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0268839.1 Non Characterized Hit- tr|H2Y7U4|H2Y7U4_CIOSA
Uncharacterized protein OS=Ciona savignyi GN=Csa.9241
,36.48,1e-17,seg,NULL; coiled-coil,NULL;
Prp19_bind,Micro-fibrillar-associated protein 1, C-terminal; SUBFAMILY
N,CUFF.17759.1
         (277 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g083140.1 | microfibrillar-associated-like protein | HC | ...   143   2e-34

>Medtr8g083140.1 | microfibrillar-associated-like protein | HC |
           chr8:35121606-35118300 | 20130731
          Length = 436

 Score =  143 bits (360), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 88/117 (75%), Positives = 92/117 (78%), Gaps = 4/117 (3%)

Query: 1   MSVTAGVSDTVIAVRDKLRGKIGQTKVKRYWPGKVPXXXXXXXXXXXXXXXXXFRPNREA 60
           MSVTAGVSDTVIAVRDKLRGKIGQTKV RYWPGK P                  R +RE 
Sbjct: 1   MSVTAGVSDTVIAVRDKLRGKIGQTKVNRYWPGKAPEWADKEIEDASGD----IRSDREV 56

Query: 61  ALEEAFPRHEEDAAIVRKDDRRLRRLAESRIDNREEVRADHRRIRQAEIVSTIEEEA 117
           AL++AFPRHEED AIVRKDDRRLRRL ESR+DNREEVR DHRRIRQAEIVSTIEEEA
Sbjct: 57  ALDKAFPRHEEDTAIVRKDDRRLRRLIESRVDNREEVREDHRRIRQAEIVSTIEEEA 113



 Score =  108 bits (269), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 58/92 (63%), Positives = 62/92 (67%)

Query: 183 TGVAMVKPVFVPKSERDTIXXXXXXXXXXXXXXXXXXXXXXXXXXXTKQLVVEEIRKDHE 242
           TGVAMVKPVFVPKSERDTI                           T+Q+VVEEIRKD E
Sbjct: 178 TGVAMVKPVFVPKSERDTIAERERLEAEEEALEEARKRRMEERRNETRQIVVEEIRKDQE 237

Query: 243 IQRNMELGANIADVDTDDELNEAEEYEAWKVR 274
           IQ+N+EL ANI DVDTDDELNEAEEYEAWKVR
Sbjct: 238 IQKNIELEANIDDVDTDDELNEAEEYEAWKVR 269