Miyakogusa Predicted Gene

Lj0g3v0268649.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0268649.1 tr|B9HAE3|B9HAE3_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_561276 PE=4
SV=1,46.53,2e-18,seg,NULL,CUFF.17748.1
         (143 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g116530.1 | stress induced protein | HC | chr4:48276959-48...   144   3e-35
Medtr2g461190.1 | stress induced protein | HC | chr2:25246302-25...   119   1e-27
Medtr4g106650.1 | hypothetical protein | HC | chr4:44011506-4401...    60   5e-10
Medtr3g078240.1 | NHL domain protein | HC | chr3:35240415-352416...    57   4e-09
Medtr6g007727.1 | NHL domain protein | HC | chr6:1857266-1857992...    54   4e-08

>Medtr4g116530.1 | stress induced protein | HC |
           chr4:48276959-48277730 | 20130731
          Length = 149

 Score =  144 bits (362), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 77/148 (52%), Positives = 95/148 (64%), Gaps = 8/148 (5%)

Query: 3   ASYERKPLVMXXXXXXXXXXAXXXXXXXXX--FKGFNLKWWQSHEEEGKRLIDQNGGGGE 60
           A+YE +PLVM                       + F  KWWQ H+EEGK L+++   G  
Sbjct: 2   AAYEGRPLVMEMEMESKQDFEETNGYGCGCGWSRIFTSKWWQRHDEEGKHLLNEKSEGNR 61

Query: 61  G---WMVEKMKKVKEASEVIAGPKWKNFIRKISG---QQKKKRFQYDEQSYALNFNSRAE 114
           G   WM++K+KK+KE SEVIAGPKWK F+RKISG   +Q+K RFQYD  SYALNFNS A+
Sbjct: 62  GEETWMMDKLKKMKETSEVIAGPKWKTFLRKISGYGKKQQKHRFQYDAHSYALNFNSGAQ 121

Query: 115 SEDDEDMPPRFSARFSAPFPAGRRQNGT 142
           SED+E +PP FS RFS P+P  RRQN T
Sbjct: 122 SEDEEYLPPSFSTRFSNPYPDARRQNET 149


>Medtr2g461190.1 | stress induced protein | HC |
           chr2:25246302-25247199 | 20130731
          Length = 141

 Score =  119 bits (297), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 66/110 (60%), Positives = 82/110 (74%), Gaps = 8/110 (7%)

Query: 33  FKGFNLKWWQSHEEEGKRLIDQNGGGGEGWMVEKMKKVKEASEVIAGPKWKNFIRKIS-- 90
           F+   LKW   ++E GK L++Q     + W V K++K+KE SEVIAGPKWK FIRKIS  
Sbjct: 34  FRACGLKWGLGNDE-GKGLLEQRE---DSWWVCKLRKMKEVSEVIAGPKWKTFIRKISMY 89

Query: 91  -GQQKKKRFQYDEQSYALNFNSRAESEDDEDMPPRFSARFSAPFPAGRRQ 139
             +Q+K +FQYDE SYALNF+S A+SEDD D+P  FSARFSAPFP+GRRQ
Sbjct: 90  GKKQQKGKFQYDEHSYALNFSSGAQSEDD-DLPHSFSARFSAPFPSGRRQ 138


>Medtr4g106650.1 | hypothetical protein | HC |
           chr4:44011506-44012525 | 20130731
          Length = 149

 Score = 60.5 bits (145), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 46/70 (65%), Gaps = 2/70 (2%)

Query: 64  VEKMKKVKEASEVIAGPKWKNFIRKISGQQKKK--RFQYDEQSYALNFNSRAESEDDEDM 121
           ++ +KK++  SE++AGP+WKNFIRK +  + K+  + QYD  SYALNF+     +  +D 
Sbjct: 62  LKALKKLRNWSEIVAGPRWKNFIRKFNNHRSKRMTKCQYDPLSYALNFDEGQNEDSHDDG 121

Query: 122 PPRFSARFSA 131
              FS R++A
Sbjct: 122 FRNFSTRYAA 131


>Medtr3g078240.1 | NHL domain protein | HC | chr3:35240415-35241616
           | 20130731
          Length = 143

 Score = 57.4 bits (137), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 8/75 (10%)

Query: 69  KVKEASEVIAGPKWKNFIRKIS-----GQQKKKRFQYDEQSYALNFNSRAESEDDEDMPP 123
           K++E SE++AGP+WK FIR+ +     G +   ++QYD  SYALNF+     E + D P 
Sbjct: 51  KIREWSEIVAGPRWKTFIRRFNRNKSGGFRHAGKYQYDPLSYALNFDEGQNGEFENDSPD 110

Query: 124 ---RFSARFSAPFPA 135
               FSAR+ A  P 
Sbjct: 111 GFRNFSARYVAAVPT 125


>Medtr6g007727.1 | NHL domain protein | HC | chr6:1857266-1857992 |
           20130731
          Length = 156

 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 36/61 (59%), Gaps = 9/61 (14%)

Query: 61  GWMVEKMKKVKEASEVIAGPKWKNFIRKI----SGQQKKKRFQYDEQSYALNFNSRAESE 116
           GWM     KV+E SE++AGPKWK FIR+     +   K+    YD  SYALNF+  A  E
Sbjct: 67  GWM-----KVRELSEIVAGPKWKTFIRRFGKNRNSYVKQGTLNYDPSSYALNFDDGATRE 121

Query: 117 D 117
           D
Sbjct: 122 D 122