Miyakogusa Predicted Gene
- Lj0g3v0268489.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0268489.1 Non Characterized Hit- tr|I1M638|I1M638_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
PE=4,82.57,0,NIEMANN-PICK C1,NULL; PATCHED-RELATED,NULL;
seg,NULL,NODE_19512_length_4214_cov_79.163979.path2.1
(574 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr5g099070.1 | niemann-pick C1-like protein | HC | chr5:43436... 805 0.0
Medtr3g115450.3 | niemann-pick C1-like protein | HC | chr3:54006... 682 0.0
Medtr3g115450.4 | niemann-pick C1-like protein | HC | chr3:54006... 682 0.0
Medtr3g115450.2 | niemann-pick C1-like protein | HC | chr3:54006... 682 0.0
Medtr3g115450.1 | niemann-pick C1-like protein | HC | chr3:54007... 681 0.0
>Medtr5g099070.1 | niemann-pick C1-like protein | HC |
chr5:43436947-43416142 | 20130731
Length = 1340
Score = 805 bits (2078), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/558 (75%), Positives = 460/558 (82%), Gaps = 15/558 (2%)
Query: 31 QISRSIHSNEYCAMYDICGQRSDGKVLNCPYPSPSVKPHDLLSAKIQSLCPTITGNVCCT 90
QI + HS EYC+MYDICGQR+DGKVLNCPYPSPSVKP+DLLSAKIQSLCP++ GNVCCT
Sbjct: 55 QIMSNTHSEEYCSMYDICGQRTDGKVLNCPYPSPSVKPNDLLSAKIQSLCPSLNGNVCCT 114
Query: 91 EEQL--------QAVPILVGCPACLRNFLNLFCELSCSPNQSLFINVTSISQVDGNMTVD 142
E+Q QAVPILVGCPACLRNFLNLFCELSCSPNQSLFINVTS+S V+GN+TVD
Sbjct: 115 EQQFETLRAQVQQAVPILVGCPACLRNFLNLFCELSCSPNQSLFINVTSVSLVNGNITVD 174
Query: 143 GIDLYVTETFGEGLYSACKDVKFGTMNTRAIDFVGAGANNYKEWFAFLGQKVPPGFPGSP 202
ID Y TETFG+GLY ACKDVKFGTMNTRAIDFVG GA+NY+EWF+FLGQKVP GFPGSP
Sbjct: 175 AIDFYATETFGDGLYQACKDVKFGTMNTRAIDFVGGGASNYQEWFSFLGQKVPLGFPGSP 234
Query: 203 YSIDFKTTILDSSPMELMNASVYSCNDTSLGXXXXXXXXXXXXXXXXXXXXXXXXXXIKM 262
YSI FKTTI DSSPM+ MNA VYSCNDTSLG I+M
Sbjct: 235 YSIHFKTTIPDSSPMKPMNAPVYSCNDTSLGCSCGDCPSSPVCSGSEPSPPTKDPCSIRM 294
Query: 263 GSLKVRCVDLSLAVLYIVLVFVLFGWIXXXXXXXXXXXGSSAEPLLVS---EGRSFTNLP 319
GSLKVRCVD SLA+LY++LVFVL GW+ GS EPLL EG SFTN+
Sbjct: 295 GSLKVRCVDFSLALLYVLLVFVLLGWVLLQRTRQERRVGSDVEPLLNDMGDEGSSFTNIQ 354
Query: 320 KDG----EVLVIDPQRQNEVQYSFIQEWLSNFYRAYGRWAARRPTIVLCSSLAIVILLCF 375
+D E V+DPQRQ +Q+SF+Q +LS FYR+YGRWAA RP VLC SL IV+LLC
Sbjct: 355 RDETHPEEEQVMDPQRQKAMQFSFVQGYLSRFYRSYGRWAAMRPNTVLCLSLVIVLLLCL 414
Query: 376 GLLRFNVETRPEKLWVGPESKAAEEKEFFDSHLAPFYRIEQLIIATLPESEHGKPPSIVT 435
GLLRF VETRPEKLW GP SKAAEEK++FDSHLAPFYRIEQLIIAT+P+SEHGKPPSI+T
Sbjct: 415 GLLRFEVETRPEKLWTGPGSKAAEEKDYFDSHLAPFYRIEQLIIATIPDSEHGKPPSIIT 474
Query: 436 DDNIELLFEIQEKVDEIRANYSGLLVSLSDICLKPLGEDCATQSILQYFQMDPDNFDNYG 495
+DNIELLFEIQEKVD IRANYSGL VSLSDICLKPLG+DCATQSILQYFQMD DN+D+YG
Sbjct: 475 EDNIELLFEIQEKVDGIRANYSGLFVSLSDICLKPLGDDCATQSILQYFQMDSDNYDDYG 534
Query: 496 GVEHAEYCFQHYTSTETCFSAFKAPLEPTTALGGFSGNNYSEASAFIITYPVNNALTKVG 555
GVEHAEYCFQHYTSTETCFSAFKAPLEPTTALGGFSGNNYSEASAFIITYPVNNAL K G
Sbjct: 535 GVEHAEYCFQHYTSTETCFSAFKAPLEPTTALGGFSGNNYSEASAFIITYPVNNALAKFG 594
Query: 556 DENGKAIAWEKAFIQLAK 573
DENGKAIAWEKAFIQLAK
Sbjct: 595 DENGKAIAWEKAFIQLAK 612
>Medtr3g115450.3 | niemann-pick C1-like protein | HC |
chr3:54006798-53989443 | 20130731
Length = 1284
Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/554 (59%), Positives = 406/554 (73%), Gaps = 18/554 (3%)
Query: 37 HSNEYCAMYDICGQRSDGKVLNCPYPSPSVKPHDLLSAKIQSLCPTITGNVCCTEEQL-- 94
HS EYCAMYDICG+RSDGKV+NCP+ SP+VKP DLLS+KIQSLCPTITGNVCCT Q
Sbjct: 39 HSVEYCAMYDICGKRSDGKVINCPFGSPAVKPDDLLSSKIQSLCPTITGNVCCTGAQFDT 98
Query: 95 ------QAVPILVGCPACLRNFLNLFCELSCSPNQSLFINVTSISQVDGNMTVDGIDLYV 148
QA+P LVGCPACLRNFLNLFCEL+CSPNQSLFINVT++ +V GN+TV ID +V
Sbjct: 99 LRTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTTVDKVGGNLTVGSIDYFV 158
Query: 149 TETFGEGLYSACKDVKFGTMNTRAIDFVGAGANNYKEWFAFLGQKVPPGFPGSPYSIDFK 208
++ FGEGLY++CKDVKFGT N+ + F+G GA N KEWFAF+G+K PG GSPY+I F
Sbjct: 159 SDAFGEGLYNSCKDVKFGTANSLVMQFIGGGAQNVKEWFAFIGKKAAPGGFGSPYAIMFP 218
Query: 209 TTILDSSPMELMNASVYSCNDTSLGXXXXXX-XXXXXXXXXXXXXXXXXXXXIKMGSLKV 267
SS ME MN S YSC D SLG +K+G+L V
Sbjct: 219 PNATKSSGMEPMNVSAYSCGDISLGCSCGDCPSSSVCSSSSSTTTQKRDSCSLKIGTLMV 278
Query: 268 RCVDLSLAVLYIVLVFVLFGW-IXXXXXXXXXXXGSSAEPLLVSEGRSFT-------NLP 319
+CVDL+L VLYI+L+ V GW + + + ++S G+ + NLP
Sbjct: 279 KCVDLTLTVLYIILLSVFLGWGLYYRTRERKPAYRTKSVSNVISGGQLHSRNQEKDENLP 338
Query: 320 KDGEVLVIDPQRQNEVQYSFIQEWLSNFYRAYGRWAARRPTIVLCSSLAIVILLCFGLLR 379
+++ Q +NEV+ S +Q ++SNFYR YG + AR P +VL SSLAIVILLC GL+R
Sbjct: 339 MH-QIIEDVSQNRNEVRLSAVQGYMSNFYRKYGLYVARNPIMVLASSLAIVILLCLGLIR 397
Query: 380 FNVETRPEKLWVGPESKAAEEKEFFDSHLAPFYRIEQLIIATLPESEHGKPPSIVTDDNI 439
F VETRPEKLWVGP SKAAEEK+FFDSHLAPFYRIEQLI+ T+P+ + P IV++DNI
Sbjct: 398 FKVETRPEKLWVGPGSKAAEEKQFFDSHLAPFYRIEQLILGTVPDHVNSTSPRIVSEDNI 457
Query: 440 ELLFEIQEKVDEIRANYSGLLVSLSDICLKPLGEDCATQSILQYFQMDPDNFDNYGGVEH 499
+ LFE+Q+KVD IRAN+SGL+VSL DICLKPL ++CATQSILQYF+MDP+NFDNYGGVEH
Sbjct: 458 KFLFEVQKKVDAIRANHSGLMVSLQDICLKPLDKECATQSILQYFKMDPNNFDNYGGVEH 517
Query: 500 AEYCFQHYTSTETCFSAFKAPLEPTTALGGFSGNNYSEASAFIITYPVNNALTKVGDENG 559
YCF+HY+S + C SAFK PL+P+T LGGFSGN+YS ASAFI+TYPVNNA+ + G+EN
Sbjct: 518 LTYCFEHYSSADQCMSAFKGPLDPSTVLGGFSGNDYSGASAFIVTYPVNNAIDEEGNENA 577
Query: 560 KAIAWEKAFIQLAK 573
KA+AWEK FIQL K
Sbjct: 578 KAVAWEKTFIQLVK 591
>Medtr3g115450.4 | niemann-pick C1-like protein | HC |
chr3:54006798-53989923 | 20130731
Length = 1284
Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/554 (59%), Positives = 406/554 (73%), Gaps = 18/554 (3%)
Query: 37 HSNEYCAMYDICGQRSDGKVLNCPYPSPSVKPHDLLSAKIQSLCPTITGNVCCTEEQL-- 94
HS EYCAMYDICG+RSDGKV+NCP+ SP+VKP DLLS+KIQSLCPTITGNVCCT Q
Sbjct: 39 HSVEYCAMYDICGKRSDGKVINCPFGSPAVKPDDLLSSKIQSLCPTITGNVCCTGAQFDT 98
Query: 95 ------QAVPILVGCPACLRNFLNLFCELSCSPNQSLFINVTSISQVDGNMTVDGIDLYV 148
QA+P LVGCPACLRNFLNLFCEL+CSPNQSLFINVT++ +V GN+TV ID +V
Sbjct: 99 LRTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTTVDKVGGNLTVGSIDYFV 158
Query: 149 TETFGEGLYSACKDVKFGTMNTRAIDFVGAGANNYKEWFAFLGQKVPPGFPGSPYSIDFK 208
++ FGEGLY++CKDVKFGT N+ + F+G GA N KEWFAF+G+K PG GSPY+I F
Sbjct: 159 SDAFGEGLYNSCKDVKFGTANSLVMQFIGGGAQNVKEWFAFIGKKAAPGGFGSPYAIMFP 218
Query: 209 TTILDSSPMELMNASVYSCNDTSLGXXXXXX-XXXXXXXXXXXXXXXXXXXXIKMGSLKV 267
SS ME MN S YSC D SLG +K+G+L V
Sbjct: 219 PNATKSSGMEPMNVSAYSCGDISLGCSCGDCPSSSVCSSSSSTTTQKRDSCSLKIGTLMV 278
Query: 268 RCVDLSLAVLYIVLVFVLFGW-IXXXXXXXXXXXGSSAEPLLVSEGRSFT-------NLP 319
+CVDL+L VLYI+L+ V GW + + + ++S G+ + NLP
Sbjct: 279 KCVDLTLTVLYIILLSVFLGWGLYYRTRERKPAYRTKSVSNVISGGQLHSRNQEKDENLP 338
Query: 320 KDGEVLVIDPQRQNEVQYSFIQEWLSNFYRAYGRWAARRPTIVLCSSLAIVILLCFGLLR 379
+++ Q +NEV+ S +Q ++SNFYR YG + AR P +VL SSLAIVILLC GL+R
Sbjct: 339 MH-QIIEDVSQNRNEVRLSAVQGYMSNFYRKYGLYVARNPIMVLASSLAIVILLCLGLIR 397
Query: 380 FNVETRPEKLWVGPESKAAEEKEFFDSHLAPFYRIEQLIIATLPESEHGKPPSIVTDDNI 439
F VETRPEKLWVGP SKAAEEK+FFDSHLAPFYRIEQLI+ T+P+ + P IV++DNI
Sbjct: 398 FKVETRPEKLWVGPGSKAAEEKQFFDSHLAPFYRIEQLILGTVPDHVNSTSPRIVSEDNI 457
Query: 440 ELLFEIQEKVDEIRANYSGLLVSLSDICLKPLGEDCATQSILQYFQMDPDNFDNYGGVEH 499
+ LFE+Q+KVD IRAN+SGL+VSL DICLKPL ++CATQSILQYF+MDP+NFDNYGGVEH
Sbjct: 458 KFLFEVQKKVDAIRANHSGLMVSLQDICLKPLDKECATQSILQYFKMDPNNFDNYGGVEH 517
Query: 500 AEYCFQHYTSTETCFSAFKAPLEPTTALGGFSGNNYSEASAFIITYPVNNALTKVGDENG 559
YCF+HY+S + C SAFK PL+P+T LGGFSGN+YS ASAFI+TYPVNNA+ + G+EN
Sbjct: 518 LTYCFEHYSSADQCMSAFKGPLDPSTVLGGFSGNDYSGASAFIVTYPVNNAIDEEGNENA 577
Query: 560 KAIAWEKAFIQLAK 573
KA+AWEK FIQL K
Sbjct: 578 KAVAWEKTFIQLVK 591
>Medtr3g115450.2 | niemann-pick C1-like protein | HC |
chr3:54006806-53989459 | 20130731
Length = 1284
Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/554 (59%), Positives = 406/554 (73%), Gaps = 18/554 (3%)
Query: 37 HSNEYCAMYDICGQRSDGKVLNCPYPSPSVKPHDLLSAKIQSLCPTITGNVCCTEEQL-- 94
HS EYCAMYDICG+RSDGKV+NCP+ SP+VKP DLLS+KIQSLCPTITGNVCCT Q
Sbjct: 39 HSVEYCAMYDICGKRSDGKVINCPFGSPAVKPDDLLSSKIQSLCPTITGNVCCTGAQFDT 98
Query: 95 ------QAVPILVGCPACLRNFLNLFCELSCSPNQSLFINVTSISQVDGNMTVDGIDLYV 148
QA+P LVGCPACLRNFLNLFCEL+CSPNQSLFINVT++ +V GN+TV ID +V
Sbjct: 99 LRTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTTVDKVGGNLTVGSIDYFV 158
Query: 149 TETFGEGLYSACKDVKFGTMNTRAIDFVGAGANNYKEWFAFLGQKVPPGFPGSPYSIDFK 208
++ FGEGLY++CKDVKFGT N+ + F+G GA N KEWFAF+G+K PG GSPY+I F
Sbjct: 159 SDAFGEGLYNSCKDVKFGTANSLVMQFIGGGAQNVKEWFAFIGKKAAPGGFGSPYAIMFP 218
Query: 209 TTILDSSPMELMNASVYSCNDTSLGXXXXXX-XXXXXXXXXXXXXXXXXXXXIKMGSLKV 267
SS ME MN S YSC D SLG +K+G+L V
Sbjct: 219 PNATKSSGMEPMNVSAYSCGDISLGCSCGDCPSSSVCSSSSSTTTQKRDSCSLKIGTLMV 278
Query: 268 RCVDLSLAVLYIVLVFVLFGW-IXXXXXXXXXXXGSSAEPLLVSEGRSFT-------NLP 319
+CVDL+L VLYI+L+ V GW + + + ++S G+ + NLP
Sbjct: 279 KCVDLTLTVLYIILLSVFLGWGLYYRTRERKPAYRTKSVSNVISGGQLHSRNQEKDENLP 338
Query: 320 KDGEVLVIDPQRQNEVQYSFIQEWLSNFYRAYGRWAARRPTIVLCSSLAIVILLCFGLLR 379
+++ Q +NEV+ S +Q ++SNFYR YG + AR P +VL SSLAIVILLC GL+R
Sbjct: 339 MH-QIIEDVSQNRNEVRLSAVQGYMSNFYRKYGLYVARNPIMVLASSLAIVILLCLGLIR 397
Query: 380 FNVETRPEKLWVGPESKAAEEKEFFDSHLAPFYRIEQLIIATLPESEHGKPPSIVTDDNI 439
F VETRPEKLWVGP SKAAEEK+FFDSHLAPFYRIEQLI+ T+P+ + P IV++DNI
Sbjct: 398 FKVETRPEKLWVGPGSKAAEEKQFFDSHLAPFYRIEQLILGTVPDHVNSTSPRIVSEDNI 457
Query: 440 ELLFEIQEKVDEIRANYSGLLVSLSDICLKPLGEDCATQSILQYFQMDPDNFDNYGGVEH 499
+ LFE+Q+KVD IRAN+SGL+VSL DICLKPL ++CATQSILQYF+MDP+NFDNYGGVEH
Sbjct: 458 KFLFEVQKKVDAIRANHSGLMVSLQDICLKPLDKECATQSILQYFKMDPNNFDNYGGVEH 517
Query: 500 AEYCFQHYTSTETCFSAFKAPLEPTTALGGFSGNNYSEASAFIITYPVNNALTKVGDENG 559
YCF+HY+S + C SAFK PL+P+T LGGFSGN+YS ASAFI+TYPVNNA+ + G+EN
Sbjct: 518 LTYCFEHYSSADQCMSAFKGPLDPSTVLGGFSGNDYSGASAFIVTYPVNNAIDEEGNENA 577
Query: 560 KAIAWEKAFIQLAK 573
KA+AWEK FIQL K
Sbjct: 578 KAVAWEKTFIQLVK 591
>Medtr3g115450.1 | niemann-pick C1-like protein | HC |
chr3:54007010-53991920 | 20130731
Length = 1362
Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/554 (59%), Positives = 406/554 (73%), Gaps = 18/554 (3%)
Query: 37 HSNEYCAMYDICGQRSDGKVLNCPYPSPSVKPHDLLSAKIQSLCPTITGNVCCTEEQL-- 94
HS EYCAMYDICG+RSDGKV+NCP+ SP+VKP DLLS+KIQSLCPTITGNVCCT Q
Sbjct: 43 HSVEYCAMYDICGKRSDGKVINCPFGSPAVKPDDLLSSKIQSLCPTITGNVCCTGAQFDT 102
Query: 95 ------QAVPILVGCPACLRNFLNLFCELSCSPNQSLFINVTSISQVDGNMTVDGIDLYV 148
QA+P LVGCPACLRNFLNLFCEL+CSPNQSLFINVT++ +V GN+TV ID +V
Sbjct: 103 LRTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTTVDKVGGNLTVGSIDYFV 162
Query: 149 TETFGEGLYSACKDVKFGTMNTRAIDFVGAGANNYKEWFAFLGQKVPPGFPGSPYSIDFK 208
++ FGEGLY++CKDVKFGT N+ + F+G GA N KEWFAF+G+K PG GSPY+I F
Sbjct: 163 SDAFGEGLYNSCKDVKFGTANSLVMQFIGGGAQNVKEWFAFIGKKAAPGGFGSPYAIMFP 222
Query: 209 TTILDSSPMELMNASVYSCNDTSLGXXXXXXXXXXXXXXXXXXXXXXXXX-XIKMGSLKV 267
SS ME MN S YSC D SLG +K+G+L V
Sbjct: 223 PNATKSSGMEPMNVSAYSCGDISLGCSCGDCPSSSVCSSSSSTTTQKRDSCSLKIGTLMV 282
Query: 268 RCVDLSLAVLYIVLVFVLFGW-IXXXXXXXXXXXGSSAEPLLVSEGRSFT-------NLP 319
+CVDL+L VLYI+L+ V GW + + + ++S G+ + NLP
Sbjct: 283 KCVDLTLTVLYIILLSVFLGWGLYYRTRERKPAYRTKSVSNVISGGQLHSRNQEKDENLP 342
Query: 320 KDGEVLVIDPQRQNEVQYSFIQEWLSNFYRAYGRWAARRPTIVLCSSLAIVILLCFGLLR 379
+++ Q +NEV+ S +Q ++SNFYR YG + AR P +VL SSLAIVILLC GL+R
Sbjct: 343 MH-QIIEDVSQNRNEVRLSAVQGYMSNFYRKYGLYVARNPIMVLASSLAIVILLCLGLIR 401
Query: 380 FNVETRPEKLWVGPESKAAEEKEFFDSHLAPFYRIEQLIIATLPESEHGKPPSIVTDDNI 439
F VETRPEKLWVGP SKAAEEK+FFDSHLAPFYRIEQLI+ T+P+ + P IV++DNI
Sbjct: 402 FKVETRPEKLWVGPGSKAAEEKQFFDSHLAPFYRIEQLILGTVPDHVNSTSPRIVSEDNI 461
Query: 440 ELLFEIQEKVDEIRANYSGLLVSLSDICLKPLGEDCATQSILQYFQMDPDNFDNYGGVEH 499
+ LFE+Q+KVD IRAN+SGL+VSL DICLKPL ++CATQSILQYF+MDP+NFDNYGGVEH
Sbjct: 462 KFLFEVQKKVDAIRANHSGLMVSLQDICLKPLDKECATQSILQYFKMDPNNFDNYGGVEH 521
Query: 500 AEYCFQHYTSTETCFSAFKAPLEPTTALGGFSGNNYSEASAFIITYPVNNALTKVGDENG 559
YCF+HY+S + C SAFK PL+P+T LGGFSGN+YS ASAFI+TYPVNNA+ + G+EN
Sbjct: 522 LTYCFEHYSSADQCMSAFKGPLDPSTVLGGFSGNDYSGASAFIVTYPVNNAIDEEGNENA 581
Query: 560 KAIAWEKAFIQLAK 573
KA+AWEK FIQL K
Sbjct: 582 KAVAWEKTFIQLVK 595