Miyakogusa Predicted Gene

Lj0g3v0268209.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0268209.1 tr|B9H0C6|B9H0C6_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_800704 PE=4
SV=1,76.69,0,NMD3,NMD3; SUBFAMILY NOT NAMED,NULL; NONSENSE-MEDIATED
MRNA DECAY PROTEIN 3,NULL; seg,NULL,CUFF.17706.1
         (374 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g064880.1 | nonsense-mediated mRNA decay NMD3 family prote...   486   e-137
Medtr4g107030.1 | nonsense-mediated mRNA decay NMD3 family prote...   322   3e-88
Medtr5g091890.1 | nonsense-mediated mRNA decay NMD3 family prote...   303   2e-82
Medtr5g090460.1 | nonsense-mediated mRNA decay protein | LC | ch...   168   6e-42
Medtr5g006990.1 | nonsense-mediated mRNA decay protein | LC | ch...   162   6e-40
Medtr5g089690.1 | nonsense-mediated mRNA decay protein | LC | ch...   161   1e-39
Medtr5g091160.1 | nonsense-mediated mRNA decay protein | LC | ch...   157   1e-38
Medtr5g008620.1 | nonsense-mediated mRNA decay protein | LC | ch...   152   8e-37
Medtr5g090030.1 | nonsense-mediated mRNA decay protein | LC | ch...   150   1e-36
Medtr5g011470.1 | nonsense-mediated mRNA decay protein | LC | ch...   146   3e-35
Medtr5g011640.1 | nonsense-mediated mRNA decay protein | LC | ch...   146   3e-35
Medtr5g092540.1 | nonsense-mediated mRNA decay protein | LC | ch...   140   3e-33
Medtr5g091490.1 | nonsense-mediated mRNA decay protein | LC | ch...   135   8e-32
Medtr4g069000.1 | nonsense-mediated mRNA decay protein | LC | ch...    68   1e-11
Medtr8g442440.1 | nonsense-mediated mRNA decay protein, putative...    66   5e-11
Medtr0001s0160.1 | transmembrane protein, putative | LC | scaffo...    56   5e-08

>Medtr3g064880.1 | nonsense-mediated mRNA decay NMD3 family protein
           | HC | chr3:29269880-29272912 | 20130731
          Length = 511

 Score =  486 bits (1251), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 239/342 (69%), Positives = 280/342 (81%), Gaps = 9/342 (2%)

Query: 1   MCDSCTRVAANPDQWIAAVQLRQHVSHRRTFFYLEQLILKHGAAARAIRIKQMHEGIDFF 60
           MC+SC+RVAANPDQWIAAVQLRQHVSHRRTF+YLEQLIL+HGAAARAIRIKQM  GIDF+
Sbjct: 144 MCESCSRVAANPDQWIAAVQLRQHVSHRRTFYYLEQLILRHGAAARAIRIKQMDHGIDFY 203

Query: 61  FSNKNHGEEFVKFLRKVAPIRSNGDNMQLVSHDTKSNEYNYKFTFSVEISPICREDLICL 120
           FSN++HG +FV+F+ KVAP++S  D  QLVSHD+KSN YNYK+TFSVEISPICREDLICL
Sbjct: 204 FSNRSHGIKFVEFVGKVAPVKSRSDK-QLVSHDSKSNNYNYKYTFSVEISPICREDLICL 262

Query: 121 PHNVALSLGNLGPLVICTKVTNNIVLLDPFTLRHCFLDADKYWR-AFKSLLTSRQLXXXX 179
           P   A  LGN+GP+VICTKVTN+I LLDP TL+  FLDA++YWR +FKSLLTSRQL    
Sbjct: 263 PPKAAAILGNIGPIVICTKVTNSIALLDPLTLKFGFLDAEQYWRTSFKSLLTSRQL--VE 320

Query: 180 XXXXXXXXXXXXXXXGGTKYVLALAEVARVSDFGKNDTRFSIRTHLGHLLNPGDYALGYD 239
                          GGTKY LA A+VARVSDFGKNDT FSIRTHLGHLL PGD ALGYD
Sbjct: 321 YIVLDVEVVSSEVNVGGTKYALADAQVARVSDFGKNDTMFSIRTHLGHLLKPGDNALGYD 380

Query: 240 LHGANCNDIELDKFKGPLPEAILVKKSYEEKRLKQRGKPRSWKLKSLNMEVDDKGRTDPD 299
           L+ AN ND+ELD++KG +PE +L+KKSY EKR     K RS+KLK + ME DDK + + D
Sbjct: 381 LYAANSNDMELDRYKGNIPEVVLIKKSYPEKR-----KTRSFKLKRIPMEADDKIKVNED 435

Query: 300 KMNSEYEQFLKDLEENPDLRFNISLYENKEYQPSDMASVTDG 341
           K ++EYE FLK+LEENP+LRFNISLY+NK+YQPS++ASVTDG
Sbjct: 436 KRSAEYELFLKELEENPELRFNISLYQNKDYQPSEVASVTDG 477


>Medtr4g107030.1 | nonsense-mediated mRNA decay NMD3 family protein
           | HC | chr4:43995360-43996798 | 20130731
          Length = 436

 Score =  322 bits (826), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 175/295 (59%), Positives = 204/295 (69%), Gaps = 38/295 (12%)

Query: 23  QHVSHRRTFFYLEQLILKHGAAARAIRIKQMHEGIDFFFSNKNHGEEFVKFLRKVAPIRS 82
           QHVSHRRTFFYLEQLILKHGAAARA+RIKQM  GIDF+FS ++HG  F++F+ KVAPIRS
Sbjct: 151 QHVSHRRTFFYLEQLILKHGAAARAVRIKQMDHGIDFYFSKRSHGNNFLEFIGKVAPIRS 210

Query: 83  NGDNMQLVSHDTKSNEYNYKFTFSVEISPICREDLICLPHNVALSLGNLGPLVICTKVTN 142
             D  QLVSHD+KSN+YNYK+TFSVEISPICREDLICLP    ++LGN+GP+VICTKVTN
Sbjct: 211 RNDK-QLVSHDSKSNDYNYKYTFSVEISPICREDLICLPPKAYIALGNIGPIVICTKVTN 269

Query: 143 NIVLLDPFTLRHCFLDADKYWRA-FKSLLTSRQLXXXXXXXXXXXXXX---XXXXXGGTK 198
           +I LLDP TL++ FLDAD+YWRA FKSLLTS++L                      GGTK
Sbjct: 270 SIALLDPLTLKYSFLDADQYWRASFKSLLTSKELVEYIVLDLEVVSSKIGPSEITMGGTK 329

Query: 199 YVLALAEVARVSDFGKNDTRFSIRTHLGHLLNPGDYALGYDLHGANCNDIELDKFKGPLP 258
           YVLA A+                         PGD+ALGYDL+ AN ND E + +KG +P
Sbjct: 330 YVLADAQ-------------------------PGDHALGYDLYRANSNDTEYENYKGHIP 364

Query: 259 EAILVKKSYEEKRLKQRGKPRSWKLKSLNMEVDDKGRTDPDKMNSEYEQFLKDLE 313
           E IL+KKSY+EKR    GKPRSW  KSL MEVDDK   D    N E + FLKD E
Sbjct: 365 EVILIKKSYKEKRC---GKPRSW--KSLPMEVDDKVGVD---YNLERDLFLKDPE 411


>Medtr5g091890.1 | nonsense-mediated mRNA decay NMD3 family protein
           | HC | chr5:40103554-40101723 | 20130731
          Length = 476

 Score =  303 bits (775), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 160/284 (56%), Positives = 195/284 (68%), Gaps = 10/284 (3%)

Query: 1   MCDSCTRVAANPDQWIAAVQLRQHVSHRRTFFYLEQLILKHGAAARAIRIKQMHEGIDFF 60
           +C+ CTRV AN +QW A VQLRQHVSH R+ F LEQ ILKHG     +RIK+M +GIDFF
Sbjct: 144 ICEDCTRVNANANQWSAVVQLRQHVSHMRSIFDLEQAILKHGVGRNVVRIKKMKQGIDFF 203

Query: 61  FSNKNHGEEFVKFLRKVAPIR-SNGDNMQLVSHDTKSNEYNYKFTFSVEISPICREDLIC 119
           F  ++  ++FV F++   P++  NG   +LVS D KSN+YNYK+TFSVEI P+CREDLI 
Sbjct: 204 FDRESCAKKFVDFVKAQVPVKICNGK--ELVSRDKKSNDYNYKYTFSVEICPVCREDLIF 261

Query: 120 LPHNVALSLGNLGPLVICTKVTNNIVLLDPFTLRHCFLDADKYWRA-FKSLLTSRQLXXX 178
           LP  VA SLGN+GP+V+CT+VTN I L DP T   CFL  D YWRA FKSLLTS++L   
Sbjct: 262 LPPKVASSLGNIGPIVVCTRVTNTIALFDPITSGRCFLVGDVYWRAPFKSLLTSKEL--V 319

Query: 179 XXXXXXXXXXXXXXXXGGTKYVLALAEVARVSDFGKNDTRFSIRTHLGHLLNPGDYALGY 238
                            G K+ LA  EVARV DFGKNDTRF+I+THLG+LL  GD+A GY
Sbjct: 320 EYVVLDVEEVHSEVTVDGKKFGLANVEVARVKDFGKNDTRFNIKTHLGYLLKFGDHAFGY 379

Query: 239 DLHGANCND--IELDKFKGPLPEAILVKKSYEEKRLKQRGKPRS 280
           DL G N  D  IEL ++ G    AIL+KK YEEKR K+RGK +S
Sbjct: 380 DLCGVNSGDSEIELAEYIG--GGAILIKKRYEEKRHKKRGKRQS 421


>Medtr5g090460.1 | nonsense-mediated mRNA decay protein | LC |
           chr5:39399230-39400261 | 20130731
          Length = 343

 Score =  168 bits (426), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 115/316 (36%), Positives = 153/316 (48%), Gaps = 45/316 (14%)

Query: 22  RQHVSHRRTFFYLEQLILKHG--AAARAIRIKQMHEGIDFFFSNKNHGEEFVKFLRKVAP 79
           ++HV H RTFF +EQ+I+ +     +   RI++  +G  F+F++ +H    V+++R + P
Sbjct: 23  QEHVCHLRTFFDVEQIIVMNCFEPLSGVKRIERNDQGFTFYFNSLDHASCLVEYIRDIVP 82

Query: 80  IRSNGDNMQLVSHDTKSNEYNYKFTFSVEISPICREDLICLPHNVALSLGNLGPLVICTK 139
                   ++  H   S      + F VEI PIC  DLI LP +VA S G    +VICT+
Sbjct: 83  -------SKIHCHQIPSE---CSYNFFVEIVPICCGDLIFLPPDVAASFG--ANIVICTR 130

Query: 140 VTNNIV-LLDPFTLRHCFLDADKYWRA-----FKSLLTSRQLXXXXXXXXXXXXXXXXXX 193
           V   I  LLDPFTL    L AD YW A     F      +                    
Sbjct: 131 VAKKITTLLDPFTLTAFSLKADHYWNAPFTHSFNRTQLVKYFVLNIVLQEDGEEIAADSS 190

Query: 194 XGGTKYVLALAEVARVSDFGKNDTRFSIRTHLGHLLNPGDYALGYDLHGANCNDIELDKF 253
               KY LA A VARV +FG NDT F IRTHLGH+L  GDYALGYDL G   N   ++  
Sbjct: 191 TAAKKYRLADAVVARVENFGNNDTTFQIRTHLGHILKSGDYALGYDLSGGGANTNIIN-- 248

Query: 254 KGPLPEAILVKKSYEEKRLKQRGKPRSWKLKSLNMEVDDKGRTDPDKMNSEYEQFLKDLE 313
            G LP AIL+ K+                        DD     PDK  S+Y+ FL+DL 
Sbjct: 249 GGYLPAAILIAKT----------------------NCDDGSVVIPDKWQSDYQLFLEDLR 286

Query: 314 ENPDLRFN-ISLYENK 328
           + P L FN  ++Y N+
Sbjct: 287 QGPHLTFNAAAMYRNQ 302


>Medtr5g006990.1 | nonsense-mediated mRNA decay protein | LC |
           chr5:1164722-1162932 | 20130731
          Length = 333

 Score =  162 bits (409), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 120/352 (34%), Positives = 160/352 (45%), Gaps = 84/352 (23%)

Query: 15  WIAAVQLRQ-HVSHRRTFFYLEQL-ILKH-GAAARAIRIK-QMHEGIDFFFSNKNHGEEF 70
           W A V +RQ HVS  RT F+LEQ+ +  H G      RI+  ++EG+ F+F++ +   E 
Sbjct: 5   WRAVVNVRQQHVSELRTLFHLEQVSVWNHLGIVGNFRRIEYNINEGLSFYFNSLSDAAEV 64

Query: 71  VKFLRKVAPIRSNGDNMQLVSHDTKSNEYNYKFTFSVEISPICREDLICLPHNVALSLG- 129
           V  +  + P +   + +               + FSVEI PIC  DLI LP N+A SLG 
Sbjct: 65  VNLIVDILPAQVQWNKID-------------PYLFSVEIVPICCGDLIILPSNIAASLGP 111

Query: 130 NLGPLVICTKVTNNIVLLDPFTLRHCFLDADKYWRA-FKSLLTSRQLXXXXXXXXXXXX- 187
           N+GP+VICT+V     LLDPFTL HCFL A +YW A F    +  QL             
Sbjct: 112 NIGPIVICTRVAKTFTLLDPFTLTHCFLKAGQYWDAPFTPSFSRPQLVEYAVLGIEKLDE 171

Query: 188 --------------------------XXXXXXXGGTKYVLALAEVARVSDFGKNDTRFSI 221
                                               KY LA A VARV D G N+  F I
Sbjct: 172 EEEEEVEENKQKKKLVFKDEHDEDGDAFATYTAAAKKYRLANAIVARVKDIGNNNHTFQI 231

Query: 222 RTHLGHLLNPGDYALGYDLHGANCNDIELDKFKGPLPEAILVKKSYEEKRLKQRGKPRSW 281
           RTHLG +L PGD+ALGYDL               P  + IL+ K                
Sbjct: 232 RTHLGRILKPGDHALGYDL---------------PEGDPILITK---------------- 260

Query: 282 KLKSLNMEVDDKGRTDP--DKMNSEYEQFLKDLEENPDLRFNI-SLYENKEY 330
               ++   ++ GR  P  DK  S Y+ FLKDL+++P L F+  ++Y N  Y
Sbjct: 261 ----ISFAKEENGRVVPVQDKWESGYQLFLKDLQQDPKLLFDQRAIYRNPTY 308


>Medtr5g089690.1 | nonsense-mediated mRNA decay protein | LC |
           chr5:38987001-38988478 | 20130731
          Length = 342

 Score =  161 bits (407), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 121/340 (35%), Positives = 161/340 (47%), Gaps = 66/340 (19%)

Query: 15  WIAAVQLRQ-HVSHRRTFFYLEQL-ILKHGAAARAIR--IKQMHEGIDFFFSNKNHGEEF 70
           W + V++RQ HVS  RT F+LEQ+ ++ +      +   I  + +G  F F+  +    F
Sbjct: 5   WRSVVKVRQQHVSQLRTVFHLEQISVMTNLGILDDVEKIIYDVDQGFSFCFNIISCAWYF 64

Query: 71  VKFLRKVAPIRSNGDNMQLVSHDTKSNEYNYKFTFSVEISPICREDLICLPHNVALSLG- 129
              +  + P++SN     ++   T+      ++ FSVEI PIC  DLI LP NV  SLG 
Sbjct: 65  ATLIGDIVPVKSN---WAMIIPRTE------RYLFSVEIVPICCGDLIFLPPNVVASLGP 115

Query: 130 NLGPLVICTKVTNNIVLLDPFTLRHCFLDADKYWRA-FKSLLTSRQLXXXXXXXXXXXXX 188
           N+GP+VICT+V     LLDPFTL HCFLDA +YW+A F       QL             
Sbjct: 116 NIGPIVICTRVAKTFTLLDPFTLTHCFLDAHQYWKAPFTHSFNRTQLVEYVVLDIVLLQD 175

Query: 189 XXXXXXGGTKYV--------------------LALAEVARVSDFGKNDTRFSIRTHLGHL 228
                    + V                    LA A VARV D G NDT F IRTHLG +
Sbjct: 176 NQQDNQDEEEEVVEENREKKYAAAAAAAKKYRLADAVVARVKDTGNNDTTFQIRTHLGRI 235

Query: 229 LNPGDYALGYDLH----GANCNDIELDKFKGPLPEAILVKK-SYEEKRLKQRGKPRSWKL 283
           L PGD+ALGYDL     GA+ N          LP AIL+ K SY                
Sbjct: 236 LKPGDHALGYDLSGGEGGADTNT------NNNLPAAILISKISYA--------------- 274

Query: 284 KSLNMEVDDKGRTDPDKMNSEYEQFLKDLEENPDLRFNIS 323
                EV+ +     DK  S+Y+ F  DL+++P L F I+
Sbjct: 275 -----EVNGRVVAVKDKWESDYQLFFNDLQQDPQLLFKIT 309


>Medtr5g091160.1 | nonsense-mediated mRNA decay protein | LC |
           chr5:39725768-39726793 | 20130731
          Length = 341

 Score =  157 bits (398), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 119/335 (35%), Positives = 155/335 (46%), Gaps = 57/335 (17%)

Query: 15  WIAAVQLRQ-HVSHRRTFFYLEQLILKHGAAA--RAIRI-KQMHEGIDFFFSNKNHGEEF 70
           W + V++RQ HVS  RT F+LEQ+ +    A   R  RI   + +G  F F+  +    F
Sbjct: 5   WRSVVKVRQQHVSQLRTVFHLEQISVMTNLAIVDRVERIIYDVDQGFSFCFNITSCAWHF 64

Query: 71  VKFLRKVAPIRSNGDNMQLVSHDTKSNEYNYKFTFSVEISPICREDLICLPHNVALSLGN 130
            + + ++ P++S      ++   T+      ++ FSVEI PIC  DLI LP NV  SLG 
Sbjct: 65  ARLIGEIVPVKSA---WAMIIPRTE------RYLFSVEIVPICCGDLIFLPPNVVASLG- 114

Query: 131 LGPLVICTKVTNNIVLLDPFTLRHCFLDADKYWRA-FKSLLTSRQLXXXXXXXXXXXXXX 189
              +VICT+V     LLDPFTL HCFLDA +YW+A F       QL              
Sbjct: 115 -PNIVICTRVAKTFTLLDPFTLTHCFLDAHQYWKAPFTHSFNRTQLVEYVVLDIVLLQDN 173

Query: 190 XX--------------------XXXGGTKYVLALAEVARVSDFGKNDTRFSIRTHLGHLL 229
                                       KY LA A VARV D G NDT F IRTHLG +L
Sbjct: 174 QQDNQDEEEEVVEENKEKKDAAAAAAAKKYRLADAVVARVKDTGNNDTTFQIRTHLGRIL 233

Query: 230 NPGDYALGYDLHGANCNDIELDKFKGPLPEAILVKK-SYEEKRLKQRGKPRSWKLKSLNM 288
            PGD+ALGYDL G              LP AIL+ K SY                     
Sbjct: 234 KPGDHALGYDLSGGVGEGGADTNTNNNLPAAILISKISYA-------------------- 273

Query: 289 EVDDKGRTDPDKMNSEYEQFLKDLEENPDLRFNIS 323
           EV+ +     DK  S+Y+ F  DL+++P L F I+
Sbjct: 274 EVNGRVVAVKDKWESDYQLFFNDLQQDPQLLFKIT 308


>Medtr5g008620.1 | nonsense-mediated mRNA decay protein | LC |
           chr5:1849296-1850424 | 20130731
          Length = 319

 Score =  152 bits (383), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 115/333 (34%), Positives = 154/333 (46%), Gaps = 74/333 (22%)

Query: 15  WIAAVQLRQ-HVSHRRTFFYLEQLILKH--GAAARAIRIK-QMHEGIDFFFSNKNHGEEF 70
           + A V +RQ HVS  RT F+LEQ+ + +  G   +  RIK  + EG+ F F++ +   + 
Sbjct: 5   FCAVVNVRQQHVSELRTLFHLEQVSVSNHLGILEKIRRIKYNIDEGLSFCFNSISDAAKV 64

Query: 71  VKFLRKVAPIRSNGDNMQLVSHDTKSNEYNYKFTFSVEISPICREDLICLPHNVALSLG- 129
           V  +  + P     + +               + FSVEI PIC  DLI LP N+A SLG 
Sbjct: 65  VNLITGILPALVQWNKID-------------PYLFSVEIVPICCGDLIILPSNIAASLGP 111

Query: 130 NLGPLVICTKVTNNIVLLDPFTLRHCFLDADKYWRA-FKSLLTSRQLXXXXXXXXXXXXX 188
           N+GP+VICT+V     LLDPFTL  CFL AD+YW A F    +  QL             
Sbjct: 112 NIGPIVICTRVARTFTLLDPFTLTRCFLKADRYWDAPFTPSFSRHQLVEYVVLGIEKLDE 171

Query: 189 XXXXXXGGT-----------------KYVLALAEVARVSDFGKND-TRFSIRTHLGHLLN 230
                                     KY LA A VARV D G N+ T F IRTHL  +L 
Sbjct: 172 EEEEEEVEENKQKNKIFGYADAAAAKKYRLANAIVARVKDIGNNNHTTFQIRTHLSRILK 231

Query: 231 PGDYALGYDLHGANCNDIELDKFKGPLPEAILVKKSYEEKRLKQRGKPRSWKLKSLNMEV 290
           PGD+ALGYDL               P  + IL+ K                    ++   
Sbjct: 232 PGDHALGYDL---------------PEGDPILITK--------------------ISFAK 256

Query: 291 DDKGRTDP--DKMNSEYEQFLKDLEENPDLRFN 321
           ++ GR  P  DK  S+Y+ FLKDL+++P L F+
Sbjct: 257 EENGRVIPVQDKWESDYQLFLKDLQQDPKLLFD 289


>Medtr5g090030.1 | nonsense-mediated mRNA decay protein | LC |
           chr5:39168249-39169221 | 20130731
          Length = 279

 Score =  150 bits (380), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 103/271 (38%), Positives = 134/271 (49%), Gaps = 32/271 (11%)

Query: 70  FVKFLRKVAPIRSNGDNMQLVSHDTKSNEYNYKFTFSVEISPICREDLICLPHNVALSLG 129
            V  +R+  PI++  D++              K+ F VEI PI   DLI LP N+A +LG
Sbjct: 23  LVDCIRRTVPIKTRCDSI----------PSEIKYHFFVEIVPIFCGDLIFLPPNIAATLG 72

Query: 130 NLGPLVICTKVTNNIVLLDPFTLRHCFLDADKYWRA-FKSLLTSRQLXXXXXXXXXXXXX 188
               +VICT+V   I LLDPFTL    L AD+YW A F    T  QL             
Sbjct: 73  --ANIVICTRVAKKITLLDPFTLTAFSLKADEYWNAPFTHSFTRTQLVKYVVLDIVLQEE 130

Query: 189 XXXXXXGGTKYVLALAEVARVSDFGKNDTRFSIRTHLGHLLNPGDYALGYDLHGANCNDI 248
                    KY LA A VARV DFG NDT F I+THLGH+L  GDYALGYDL G      
Sbjct: 131 EEIAAAAAKKYRLADAVVARVEDFGNNDTTFQIKTHLGHILKSGDYALGYDLSGRKEGGG 190

Query: 249 ELDKFKGPLPEAILVKKSYEEKRLKQRGKPRSWKLKSLNMEVDDKGRTDPDKMNSEYEQF 308
                 G LP AIL+ KS             S+  ++  + V  +G     K  S+Y+ F
Sbjct: 191 ANTNINGDLPAAILITKS-------------SYDEENGRIVVVVEG-----KWESDYQLF 232

Query: 309 LKDLEENPDLRFNI-SLYENKEYQPSDMASV 338
           LKDL+++  L F + ++Y N+ Y PS   ++
Sbjct: 233 LKDLQQDTRLTFRVAAMYRNQTYHPSSGEAI 263


>Medtr5g011470.1 | nonsense-mediated mRNA decay protein | LC |
           chr5:3298732-3300540 | 20130731
          Length = 351

 Score =  146 bits (368), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 119/359 (33%), Positives = 163/359 (45%), Gaps = 84/359 (23%)

Query: 15  WIAAVQLRQ-HVSHRRTFFYLEQLILKHGAA--ARAIRIKQM---HEGIDFFFSNKNHGE 68
           W+  + +RQ HV   RT F+LEQ+ +       +  +RIK      EG+ F F++ +   
Sbjct: 5   WVGVLNVRQQHVCQLRTLFHLEQISVWTNLTMLSHIMRIKNKIDDDEGLSFCFNSLSDAT 64

Query: 69  EFVKFLRKVAPIRSNGDNMQLVSHDTKSNEYNYKFTFSVEISPICREDLICLPHNVALSL 128
           + V  +  + P +    NM ++  + +         FSVEI PIC  DLI LP ++A S 
Sbjct: 65  DVVNLIVDILPSKVRL-NMNMIPPEERC-------IFSVEIVPICCGDLIILPSHIAASF 116

Query: 129 G-NLGPLVICTKVTNNIVLLDPFTLRHCFLDADKYWRA-FKSLLTSRQLXXXXXXXXXXX 186
           G N+GP+VICT+V     LLDPFTL HCFL A +YW A F    +  QL           
Sbjct: 117 GPNIGPIVICTRVAKIFTLLDPFTLTHCFLKAGQYWDAPFTPSFSRPQLVEYVVLGINLK 176

Query: 187 XXXXXXXXGGT------------------------------KYVLALAEVARVSDFGKND 216
                                                    KY LA A VARV D G N+
Sbjct: 177 EELEELVEENKEKKKLIIELYAADAVAAAAAVVAAEAAAAKKYRLADAMVARVKDIGNNN 236

Query: 217 -TRFSIRTHLGHLLNPGDYALGYDLH--GANCNDIELDKFKGPLPEAILVKK-SYEEKRL 272
            T F I+THLG +L PGD+ALGYDL   G + N          LP AIL+ K SY E   
Sbjct: 237 HTTFQIKTHLGRILKPGDHALGYDLSSGGVDTN----------LPAAILITKISYAE--- 283

Query: 273 KQRGKPRSWKLKSLNMEVDDKGRTDP--DKMNSEYEQFLKDLEENPDLRFN-ISLYENK 328
                             ++ GR     DK  S+Y+ FLKDL+++  L F+  ++Y N+
Sbjct: 284 ------------------EENGRVVAVQDKWESDYQLFLKDLQQDTKLLFDRRAIYRNR 324


>Medtr5g011640.1 | nonsense-mediated mRNA decay protein | LC |
           chr5:3391728-3392783 | 20130731
          Length = 351

 Score =  146 bits (368), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 119/359 (33%), Positives = 163/359 (45%), Gaps = 84/359 (23%)

Query: 15  WIAAVQLRQ-HVSHRRTFFYLEQLIL--KHGAAARAIRIKQM---HEGIDFFFSNKNHGE 68
           W+  + +RQ HV   RT F+LEQ+ +       +  +RIK      EG+ F F++ +   
Sbjct: 5   WVGVLNVRQQHVCQLRTLFHLEQISVWTNFTKLSHIMRIKNKIDDDEGLSFCFNSLSDAT 64

Query: 69  EFVKFLRKVAPIRSNGDNMQLVSHDTKSNEYNYKFTFSVEISPICREDLICLPHNVALSL 128
           + V  +  + P +    NM ++  + +         FSVEI PIC  DLI LP ++A S 
Sbjct: 65  DVVNLIVDILPSKVRL-NMNMIPPEERC-------IFSVEIVPICCGDLIILPSHIAASF 116

Query: 129 G-NLGPLVICTKVTNNIVLLDPFTLRHCFLDADKYWRA-FKSLLTSRQLXXXXXXXXXXX 186
           G N+GP+VICT+V     LLDPFTL HCFL A +YW A F    +  QL           
Sbjct: 117 GPNIGPIVICTRVAKIFTLLDPFTLTHCFLKAGQYWDAPFTPSFSRPQLVEYVVLGINLK 176

Query: 187 XXXXXXXXGGT------------------------------KYVLALAEVARVSDFGKND 216
                                                    KY LA A VARV D G N+
Sbjct: 177 EELEELVEENKEKKKLIIELYAADAVAAAAAVVAAEAAAAKKYRLADAMVARVKDIGNNN 236

Query: 217 -TRFSIRTHLGHLLNPGDYALGYDLH--GANCNDIELDKFKGPLPEAILVKK-SYEEKRL 272
            T F I+THLG +L PGD+ALGYDL   G + N          LP AIL+ K SY E   
Sbjct: 237 HTTFQIKTHLGRILKPGDHALGYDLSSGGVDTN----------LPAAILITKISYAE--- 283

Query: 273 KQRGKPRSWKLKSLNMEVDDKGRTDP--DKMNSEYEQFLKDLEENPDLRFN-ISLYENK 328
                             ++ GR     DK  S+Y+ FLKDL+++  L F+  ++Y N+
Sbjct: 284 ------------------EENGRVVAVQDKWESDYQLFLKDLQQDTKLLFDRRAIYRNR 324


>Medtr5g092540.1 | nonsense-mediated mRNA decay protein | LC |
           chr5:40417873-40418652 | 20130731
          Length = 259

 Score =  140 bits (352), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 96/243 (39%), Positives = 122/243 (50%), Gaps = 47/243 (19%)

Query: 102 KFTFSVEISPICREDLICLPHNVALSLG-NLGPLVICTKVTNNIVLLDPFTLRHCFLDAD 160
           ++ F VEI PIC  DLI LP NV  S G N+GP+VICT+V     LLDPFTL HCFLDA 
Sbjct: 8   RYLFRVEIVPICCGDLIFLPPNVVASFGENIGPIVICTRVAKTFTLLDPFTLTHCFLDAH 67

Query: 161 KYWRAFKS-----------------LLTSRQLXXXXXXXXXXXXXXXXXXXGGTKYVLAL 203
           +YW+A  +                 LL   Q                       KY LA 
Sbjct: 68  QYWKAPFTHSFNRTQLVEYVVLDTVLLQDNQDEEEEEDKEKKKNYDADAVAAAKKYCLAD 127

Query: 204 AEVARVSDFGKNDTRFSIRTHLGHLLNPGDYALGYDLHGANC---NDIELDKFKGPLPEA 260
           A VARV D G NDT F IRTHLG +L PGD+ALGYDL G       +I ++     LP A
Sbjct: 128 AVVARVKDIGNNDTTFQIRTHLGRILKPGDHALGYDLSGGEGGADTNININ-----LPAA 182

Query: 261 ILVKK-SYEEKRLKQRGKPRSWKLKSLNMEVDDKGRTDPDKMNSEYEQFLKDLEENPDLR 319
           IL+ K SY E+         + ++ +L+           DK  S+Y+ F  DL+++  L 
Sbjct: 183 ILITKISYAEE---------NGRVVALH-----------DKWESDYQLFFNDLQQDTKLL 222

Query: 320 FNI 322
           FN+
Sbjct: 223 FNV 225


>Medtr5g091490.1 | nonsense-mediated mRNA decay protein | LC |
           chr5:39879150-39880189 | 20130731
          Length = 322

 Score =  135 bits (339), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 110/323 (34%), Positives = 139/323 (43%), Gaps = 71/323 (21%)

Query: 22  RQHVSHRRTFFYLEQLIL--KHGAAARAIRIKQMHEGIDFFFSNKNHGEEFVKFLRKVAP 79
           +QHV   RTFF+LEQ+ +    G   +A RIK         +         VKF      
Sbjct: 15  QQHVCQLRTFFHLEQISVLNNFGTVRKAKRIK---------YDIDEENTSCVKF------ 59

Query: 80  IRSNGDNMQLVSHDTKSNEYNYKFTFSVEISPICREDLICLPHNVALSLGNLGPLVICTK 139
                 +  ++  +++       + F V+I PIC  DLI LP NV  SLG    +VICT+
Sbjct: 60  ------DWDMILPESEI------YLFRVKIVPICCGDLIFLPPNVVASLG--PNIVICTR 105

Query: 140 VTNNIVLLDPFTLRHCFLDADKYWRA-FKSLLTSRQLXXXXX------------------ 180
           V     LLDPFTL HCFLDA +YW+A F       QL                       
Sbjct: 106 VAKTFTLLDPFTLTHCFLDAHQYWKAPFTHSFNRTQLVEYVVLDIVLLQDNQDEEEEEEV 165

Query: 181 XXXXXXXXXXXXXXGGTKYVLALAEVARVSDFGKNDTRFSIRTHLGHLLNPGDYALGYDL 240
                            KY LA A VARV D G NDT F IRTHLG +L PGD+ALGYDL
Sbjct: 166 VEENKKEKDAAAAAAAKKYRLADAVVARVKDTGNNDTTFQIRTHLGRILKPGDHALGYDL 225

Query: 241 HGANCNDIELDKFKGPLPEAILVKK-SYEEKRLKQRGKPRSWKLKSLNMEVDDKGRTDPD 299
            G              LP AIL+ K SY                     EV+ +     D
Sbjct: 226 SGGVGEGGADTNTNNNLPAAILISKISYA--------------------EVNGRVVAVKD 265

Query: 300 KMNSEYEQFLKDLEENPDLRFNI 322
           K  S+Y+ F  DL++N  L F++
Sbjct: 266 KWESDYQLFFNDLQQNTKLIFSV 288


>Medtr4g069000.1 | nonsense-mediated mRNA decay protein | LC |
           chr4:25913045-25912058 | 20130731
          Length = 212

 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 60/135 (44%), Gaps = 24/135 (17%)

Query: 196 GTKYVLALAEVARVSDFGKNDTRFSIRTHLGHLLNPGDYALGYDLHGANCNDIELDKFKG 255
             KY LA   VARV D G NDT F IRTHLG +L P D+ALGYDL          +    
Sbjct: 90  AKKYRLADDVVARVKDIGNNDTTFQIRTHLGRILKPDDHALGYDLSRGGEGGANTNTNNN 149

Query: 256 PLPEAILVKKSYEEKRLKQRGKPRSWKLKSLNMEVDDKGRTDP--DKMNSEYEQFLKDLE 313
                ++ K SY E                      + GR     DK  S+Y+ FL  L+
Sbjct: 150 LHAAILITKISYAE----------------------ENGRVVAVQDKWESDYQLFLNYLQ 187

Query: 314 ENPDLRFNISLYENK 328
           ++P L FN+   E K
Sbjct: 188 QDPKLIFNVRAAEIK 202


>Medtr8g442440.1 | nonsense-mediated mRNA decay protein, putative |
           HC | chr8:16044353-16044003 | 20130731
          Length = 89

 Score = 66.2 bits (160), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 29/50 (58%), Positives = 37/50 (74%)

Query: 109 ISPICREDLICLPHNVALSLGNLGPLVICTKVTNNIVLLDPFTLRHCFLD 158
           +SPI  EDLICLP N A  LGN+GP+V C+KV+N+I LLD   L+  F+D
Sbjct: 20  LSPIRLEDLICLPPNAAAILGNIGPIVFCSKVSNSIALLDSLALKFGFMD 69


>Medtr0001s0160.1 | transmembrane protein, putative | LC |
           scaffold0001:55962-56354 | 20130731
          Length = 85

 Score = 56.2 bits (134), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 23/38 (60%), Positives = 30/38 (78%)

Query: 109 ISPICREDLICLPHNVALSLGNLGPLVICTKVTNNIVL 146
           I+PIC EDLICLP N A  LGN+GP+V C+ V+N++ L
Sbjct: 40  INPICLEDLICLPPNAAAILGNIGPIVFCSNVSNDMEL 77