Miyakogusa Predicted Gene
- Lj0g3v0268109.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0268109.1 Non Characterized Hit- tr|F6H200|F6H200_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,30.4,0.00000000003,seg,NULL,CUFF.17700.1
(241 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr2g078620.1 | hypothetical protein | HC | chr2:32817930-3281... 176 2e-44
>Medtr2g078620.1 | hypothetical protein | HC |
chr2:32817930-32815804 | 20130731
Length = 322
Score = 176 bits (446), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 111/243 (45%), Positives = 135/243 (55%), Gaps = 60/243 (24%)
Query: 1 MEPNDNXXXXXXXX-RDEKVEALDLLEECWYFDNMLNIRPTIPRCHSDPSPSYGLICPDF 59
M+PNDN +DEKVEA++LLEECWYFDN+LNI+P + RCHSDP PS LI +
Sbjct: 1 MDPNDNNSSCESSFCKDEKVEAMNLLEECWYFDNLLNIKPKMLRCHSDPYPSTRLISSEL 60
Query: 60 LGXXXXXXXXXXXXXXXXXXGSVPPKKIQRAPSMPPLRVKEEDKSGMDFTRGKLMHQXXX 119
L +D S + +H
Sbjct: 61 L----------------------------------------KDSSASKPSNSDFVH---- 76
Query: 120 XXXXXXXXXXXPKRIQRAPSMPPLLVRDE--DEKKGRKLVHQSLDTEVVQAASKPQSAKM 177
PK++QRAPSMPP+ V++E D+KKGRKLVHQ+ D+ + +A SK KM
Sbjct: 77 -----------PKKLQRAPSMPPIRVKEEEKDDKKGRKLVHQTSDSAMHKAGSKHHCGKM 125
Query: 178 KG-HHKSDCNKRKSKLLRTPSLPSSIGRDEKFQVNGPPRTGRSPKQPSTPTTVDNLPPRQ 236
KG H+SD N+RKSKLLRTPSLP SIGR+EKFQ RTGRS KQPS P DNLPPR
Sbjct: 126 KGLDHRSDSNRRKSKLLRTPSLPPSIGREEKFQETD-SRTGRSRKQPSAPPNNDNLPPRL 184
Query: 237 PSK 239
SK
Sbjct: 185 TSK 187