Miyakogusa Predicted Gene

Lj0g3v0268109.1
Show Alignment: 

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0268109.1 Non Characterized Hit- tr|F6H200|F6H200_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,30.4,0.00000000003,seg,NULL,CUFF.17700.1
         (241 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g078620.1 | hypothetical protein | HC | chr2:32817930-3281...   176   2e-44

>Medtr2g078620.1 | hypothetical protein | HC |
           chr2:32817930-32815804 | 20130731
          Length = 322

 Score =  176 bits (446), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 111/243 (45%), Positives = 135/243 (55%), Gaps = 60/243 (24%)

Query: 1   MEPNDNXXXXXXXX-RDEKVEALDLLEECWYFDNMLNIRPTIPRCHSDPSPSYGLICPDF 59
           M+PNDN         +DEKVEA++LLEECWYFDN+LNI+P + RCHSDP PS  LI  + 
Sbjct: 1   MDPNDNNSSCESSFCKDEKVEAMNLLEECWYFDNLLNIKPKMLRCHSDPYPSTRLISSEL 60

Query: 60  LGXXXXXXXXXXXXXXXXXXGSVPPKKIQRAPSMPPLRVKEEDKSGMDFTRGKLMHQXXX 119
           L                                        +D S    +    +H    
Sbjct: 61  L----------------------------------------KDSSASKPSNSDFVH---- 76

Query: 120 XXXXXXXXXXXPKRIQRAPSMPPLLVRDE--DEKKGRKLVHQSLDTEVVQAASKPQSAKM 177
                      PK++QRAPSMPP+ V++E  D+KKGRKLVHQ+ D+ + +A SK    KM
Sbjct: 77  -----------PKKLQRAPSMPPIRVKEEEKDDKKGRKLVHQTSDSAMHKAGSKHHCGKM 125

Query: 178 KG-HHKSDCNKRKSKLLRTPSLPSSIGRDEKFQVNGPPRTGRSPKQPSTPTTVDNLPPRQ 236
           KG  H+SD N+RKSKLLRTPSLP SIGR+EKFQ     RTGRS KQPS P   DNLPPR 
Sbjct: 126 KGLDHRSDSNRRKSKLLRTPSLPPSIGREEKFQETD-SRTGRSRKQPSAPPNNDNLPPRL 184

Query: 237 PSK 239
            SK
Sbjct: 185 TSK 187