Miyakogusa Predicted Gene

Lj0g3v0268089.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0268089.3 tr|A7RQ72|A7RQ72_NEMVE Predicted protein
OS=Nematostella vectensis GN=v1g236535 PE=4
SV=1,33.89,1e-16,zf-Nse,NULL; coiled-coil,NULL; seg,NULL;
UNCHARACTERIZED,NULL; UNCHARACTERIZED,E3 SUMO-protein
ligas,CUFF.17701.3
         (206 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g078640.1 | E3 SUMO-protein ligase MMS21 | HC | chr2:32838...   307   5e-84

>Medtr2g078640.1 | E3 SUMO-protein ligase MMS21 | HC |
           chr2:32838536-32831603 | 20130731
          Length = 244

 Score =  307 bits (786), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 140/207 (67%), Positives = 170/207 (82%), Gaps = 2/207 (0%)

Query: 1   MREIAVQLEKDRLSDKVKELEDAXXXXXXXXXXXXHFSSAVQAFSNRYQPSEQFTDFHKL 60
           M+ IAVQLEKD+L DKVKE+EDA            HFSS+VQAF NRY+P EQ TDFHK+
Sbjct: 38  MKGIAVQLEKDKLFDKVKEMEDAVVELIGLNELSVHFSSSVQAFGNRYKPGEQLTDFHKV 97

Query: 61  FEDEVSQFKANPTSDFSKHPLVRQFKEAVWKVHHEGQPLPGEEQEDIIMTSTQSNILNMT 120
           FEDE+SQF+AN  SD  +H LVRQFKEAVW VHHEGQP+PGEE +DI+MT TQSNILN  
Sbjct: 98  FEDEISQFQANRNSDVQRHTLVRQFKEAVWNVHHEGQPMPGEENDDIVMTGTQSNILNFK 157

Query: 121 CPLTGKPLTELEEPVRSKECRHIYEKKAILEYIRSK--KTQCPISGCPRMLHADMVVHDP 178
           CPL+GKP+TEL+EPVRS +CRHIYEK+ I +YI+S+  +TQCPISGCP+ L  +++V DP
Sbjct: 158 CPLSGKPITELQEPVRSMQCRHIYEKQVITQYIQSEGGRTQCPISGCPKALDVNVLVQDP 217

Query: 179 SLPVEIDELRKMNRETNVEDFTMLDDD 205
           SL V+IDE+RKM++ETNVEDFTMLD+D
Sbjct: 218 SLAVDIDEMRKMDKETNVEDFTMLDED 244