Miyakogusa Predicted Gene

Lj0g3v0268089.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0268089.1 tr|A9RUT5|A9RUT5_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_70836
,36.09,4e-17,PRA1,Prenylated rab acceptor PRA1; seg,NULL,CUFF.17701.1
         (198 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g078650.1 | PRA1 family protein | HC | chr2:32844485-32841...   256   1e-68
Medtr2g078650.2 | PRA1 family protein | HC | chr2:32844485-32843...   181   4e-46
Medtr1g070480.1 | PRA1 family protein | HC | chr1:31282735-31283...    51   6e-07

>Medtr2g078650.1 | PRA1 family protein | HC | chr2:32844485-32841932
           | 20130731
          Length = 229

 Score =  256 bits (654), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 132/155 (85%), Positives = 144/155 (92%)

Query: 42  NPFSKLTAEDFAGDTPSWSRSFIGFCGSYSFPSSPSQARFRVLENVKRYARNYAFLFIVF 101
           NPF+KLTA+DF+ DTPSWSRSF+G   SYSFPSSPSQARFRV ENVKRYARNY++LFIVF
Sbjct: 73  NPFAKLTADDFSADTPSWSRSFVGSSDSYSFPSSPSQARFRVHENVKRYARNYSYLFIVF 132

Query: 102 FACALYKMPLALVGLISCLALWDFFKYCSDRWGLDQYPLIRQCLLRIAQCATAVILIFSN 161
           FA ALYKMPLALVGLISCLALWDFFK+ SD+WGLDQYP+IRQCLLRIAQCATAVILI+SN
Sbjct: 133 FASALYKMPLALVGLISCLALWDFFKFSSDKWGLDQYPVIRQCLLRIAQCATAVILIYSN 192

Query: 162 VQMALFCALSVGYAGVILHAAFRKLTPVKPPSSSR 196
           VQMALFCA+SV YAGVILHAAFRKLTP K PS+ R
Sbjct: 193 VQMALFCAISVSYAGVILHAAFRKLTPAKQPSTVR 227


>Medtr2g078650.2 | PRA1 family protein | HC | chr2:32844485-32843127
           | 20130731
          Length = 209

 Score =  181 bits (459), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 94/112 (83%), Positives = 103/112 (91%)

Query: 42  NPFSKLTAEDFAGDTPSWSRSFIGFCGSYSFPSSPSQARFRVLENVKRYARNYAFLFIVF 101
           NPF+KLTA+DF+ DTPSWSRSF+G   SYSFPSSPSQARFRV ENVKRYARNY++LFIVF
Sbjct: 73  NPFAKLTADDFSADTPSWSRSFVGSSDSYSFPSSPSQARFRVHENVKRYARNYSYLFIVF 132

Query: 102 FACALYKMPLALVGLISCLALWDFFKYCSDRWGLDQYPLIRQCLLRIAQCAT 153
           FA ALYKMPLALVGLISCLALWDFFK+ SD+WGLDQYP+IRQCLLRIAQC  
Sbjct: 133 FASALYKMPLALVGLISCLALWDFFKFSSDKWGLDQYPVIRQCLLRIAQCGE 184


>Medtr1g070480.1 | PRA1 family protein | HC | chr1:31282735-31283563
           | 20130731
          Length = 193

 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 1/119 (0%)

Query: 69  SYSFPSSPSQARFRVLENVKRYARNYAFLFIVFFACALYKMPLALVGLISCLALWDFFKY 128
           S++ P S  +   R+  N+  +  NYA + +     +L   PL+L+  +   A+W    +
Sbjct: 42  SFTLPHSLFETTLRIKRNLNHFRINYAIIILFILFLSLLYHPLSLIVFLVVFAVWFLLFF 101

Query: 129 CSDR-WGLDQYPLIRQCLLRIAQCATAVILIFSNVQMALFCALSVGYAGVILHAAFRKL 186
             DR   L ++ +  + LL +    T V L+F+ V + +  ++ VG A V+LHAAFR +
Sbjct: 102 FRDRPVVLFRFTIDDRFLLVLLSTLTIVALVFTGVWLNVLVSVLVGSAVVVLHAAFRSI 160