Miyakogusa Predicted Gene
- Lj0g3v0267459.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0267459.1 Non Characterized Hit- tr|F6HW90|F6HW90_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,50.49,2e-19,BRX,Brevis radix-like domain; REGULATOR OF CHROMOSOME
CONDENSATION (RCC1),NULL; REGULATOR OF CHROMOS,CUFF.17657.1
(169 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr5g089900.1 | regulator of chromosome condensation (RCC1) fa... 256 6e-69
Medtr6g034795.1 | chromosome condensation regulator RCC1 repeat ... 101 3e-22
Medtr8g019620.2 | brevis radix-like protein | HC | chr8:6946947-... 89 3e-18
Medtr8g019620.1 | brevis radix-like protein | HC | chr8:6946947-... 89 3e-18
Medtr2g041170.1 | brevis radix-like protein | HC | chr2:18039563... 88 4e-18
Medtr3g064560.1 | regulator of chromosome condensation (RCC1) fa... 79 2e-15
Medtr8g071220.1 | brevis radix-like protein | HC | chr8:30217921... 79 3e-15
Medtr1g099220.1 | chromosome condensation regulator RCC1 repeat ... 75 2e-14
Medtr5g026970.1 | brevis RADIX-like protein | HC | chr5:11177365... 69 2e-12
Medtr5g026970.2 | brevis RADIX-like protein | HC | chr5:11177292... 69 2e-12
Medtr7g072410.1 | regulator of chromosome condensation (RCC1) fa... 62 2e-10
Medtr4g029410.1 | regulator of chromosome condensation (RCC1) fa... 60 1e-09
Medtr1g042800.1 | chromosome condensation regulator RCC1 repeat ... 48 5e-06
>Medtr5g089900.1 | regulator of chromosome condensation (RCC1) family
protein | HC | chr5:39105074-39114126 | 20130731
Length = 1117
Score = 256 bits (655), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 124/168 (73%), Positives = 146/168 (86%), Gaps = 4/168 (2%)
Query: 1 MAERLPIGATRNVRSPSLASFGSDLGSNDVTNATIDQLTIQTRSQESDLTGSNDQLLSNG 60
MAERLP+G ++V+SPS+ASFGS N+++ A ID+L IQ S E+DLTGSN QLLSNG
Sbjct: 953 MAERLPVGTAKSVKSPSIASFGS----NELSFAAIDRLNIQATSPEADLTGSNTQLLSNG 1008
Query: 61 SSTITNRSAGHGKHSQSNATSRNGYKTKDNESRNETEWVEQDEPGVYITLTSLPGDVIDL 120
SST++NRS G K SQS++T+RNG +TKD+ESR+ETEWVEQDEPGVYITLTSLPG VIDL
Sbjct: 1009 SSTVSNRSTGQNKQSQSDSTNRNGSRTKDSESRSETEWVEQDEPGVYITLTSLPGGVIDL 1068
Query: 121 KRVRFSRKRFSEKQAEQWWAENRARVYELYNVRLIDKSSIGVGSEELA 168
KRVRFSRKRFSEKQAE WWAENR RVYE YNVR++DKSS+GVGSE+LA
Sbjct: 1069 KRVRFSRKRFSEKQAENWWAENRVRVYEQYNVRMVDKSSVGVGSEDLA 1116
>Medtr6g034795.1 | chromosome condensation regulator RCC1 repeat
protein | HC | chr6:12109737-12119303 | 20130731
Length = 1118
Score = 101 bits (252), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 48/99 (48%), Positives = 65/99 (65%)
Query: 61 SSTITNRSAGHGKHSQSNATSRNGYKTKDNESRNETEWVEQDEPGVYITLTSLPGDVIDL 120
S + R +G+ + +S S N + ++ + EW+EQ EPGVYITL ++ DL
Sbjct: 1003 SDIVEGRDSGNFRDDESGVKSTNAALATSSNNQVDAEWIEQYEPGVYITLVAMHDGTRDL 1062
Query: 121 KRVRFSRKRFSEKQAEQWWAENRARVYELYNVRLIDKSS 159
KRVRFSR+RF E QAE WW+EN+ +VYE YNVR +DKSS
Sbjct: 1063 KRVRFSRRRFGENQAENWWSENKDKVYEKYNVRSVDKSS 1101
>Medtr8g019620.2 | brevis radix-like protein | HC |
chr8:6946947-6951587 | 20130731
Length = 369
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/96 (50%), Positives = 59/96 (61%), Gaps = 2/96 (2%)
Query: 57 LSNGSSTITNRSA--GHGKHSQSNATSRNGYKTKDNESRNETEWVEQDEPGVYITLTSLP 114
LSN T RS+ + S S +G + N S ETEWVEQDEPGVYIT+ +LP
Sbjct: 273 LSNIGVPKTERSSIDASVRTSSSEEEDHSGELSISNASDMETEWVEQDEPGVYITIRALP 332
Query: 115 GDVIDLKRVRFSRKRFSEKQAEQWWAENRARVYELY 150
G +L+RVRFSR++F E A WW ENRAR+ E Y
Sbjct: 333 GGTRELRRVRFSREKFGEMHARLWWEENRARIQEQY 368
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 48/66 (72%)
Query: 97 EWVEQDEPGVYITLTSLPGDVIDLKRVRFSRKRFSEKQAEQWWAENRARVYELYNVRLID 156
EWV Q EPGV IT SLP DLKR+RFSR+ F++ QA++WWAEN +V ELYNV+ +
Sbjct: 138 EWVAQVEPGVLITFVSLPEGGNDLKRIRFSREMFNKWQAQRWWAENYDKVMELYNVQRFN 197
Query: 157 KSSIGV 162
+ ++ +
Sbjct: 198 QEAVPL 203
>Medtr8g019620.1 | brevis radix-like protein | HC |
chr8:6946947-6951530 | 20130731
Length = 369
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/96 (50%), Positives = 59/96 (61%), Gaps = 2/96 (2%)
Query: 57 LSNGSSTITNRSA--GHGKHSQSNATSRNGYKTKDNESRNETEWVEQDEPGVYITLTSLP 114
LSN T RS+ + S S +G + N S ETEWVEQDEPGVYIT+ +LP
Sbjct: 273 LSNIGVPKTERSSIDASVRTSSSEEEDHSGELSISNASDMETEWVEQDEPGVYITIRALP 332
Query: 115 GDVIDLKRVRFSRKRFSEKQAEQWWAENRARVYELY 150
G +L+RVRFSR++F E A WW ENRAR+ E Y
Sbjct: 333 GGTRELRRVRFSREKFGEMHARLWWEENRARIQEQY 368
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 48/66 (72%)
Query: 97 EWVEQDEPGVYITLTSLPGDVIDLKRVRFSRKRFSEKQAEQWWAENRARVYELYNVRLID 156
EWV Q EPGV IT SLP DLKR+RFSR+ F++ QA++WWAEN +V ELYNV+ +
Sbjct: 138 EWVAQVEPGVLITFVSLPEGGNDLKRIRFSREMFNKWQAQRWWAENYDKVMELYNVQRFN 197
Query: 157 KSSIGV 162
+ ++ +
Sbjct: 198 QEAVPL 203
>Medtr2g041170.1 | brevis radix-like protein | HC |
chr2:18039563-18048357 | 20130731
Length = 352
Score = 87.8 bits (216), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 84/145 (57%), Gaps = 11/145 (7%)
Query: 10 TRNVRSPSLASFGSDLGSNDVTNATIDQLTIQTRSQESDLTGSND----QLLSNGSSTIT 65
+RN+ P+ G S+D + DQ ++Q++ + DL+G N +S + I+
Sbjct: 214 SRNLFRPT--GMGMGYSSSD----SYDQHSMQSKHYQYDLSGMNSTPKVSTISAAKTDIS 267
Query: 66 NRSAGHGKHSQSNATSRNGYKTKDNESRNETEWVEQDEPGVYITLTSLPGDVIDLKRVRF 125
+ +A S A R+G + N S ++EWVE+DEPGVYIT+ S+PG +++RVRF
Sbjct: 268 SVAASIRSSSSREA-DRSGDLSMSNASDPDSEWVEEDEPGVYITIRSMPGGKREIRRVRF 326
Query: 126 SRKRFSEKQAEQWWAENRARVYELY 150
SR++F E A WW ENRARV+ Y
Sbjct: 327 SREKFGEMHARLWWEENRARVHAQY 351
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 47/66 (71%)
Query: 97 EWVEQDEPGVYITLTSLPGDVIDLKRVRFSRKRFSEKQAEQWWAENRARVYELYNVRLID 156
EWV Q EPGV IT SLP DLKR+RFSR F++ QA++WWAEN +V ELYNV+ ++
Sbjct: 118 EWVAQVEPGVLITFVSLPRGGNDLKRIRFSRDIFNKWQAQRWWAENYDKVMELYNVQRLN 177
Query: 157 KSSIGV 162
+ + +
Sbjct: 178 RQAFPL 183
>Medtr3g064560.1 | regulator of chromosome condensation (RCC1) family
protein | HC | chr3:29089374-29095433 | 20130731
Length = 1032
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/58 (60%), Positives = 43/58 (74%)
Query: 95 ETEWVEQDEPGVYITLTSLPGDVIDLKRVRFSRKRFSEKQAEQWWAENRARVYELYNV 152
+ EWVEQ E GVYITLT P LKRVRFSRKRFS+K+AE+WW EN+ +V+ Y +
Sbjct: 972 KVEWVEQYENGVYITLTKSPSGEKGLKRVRFSRKRFSQKEAERWWEENQTKVHHKYEI 1029
>Medtr8g071220.1 | brevis radix-like protein | HC |
chr8:30217921-30223478 | 20130731
Length = 333
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 48/68 (70%)
Query: 97 EWVEQDEPGVYITLTSLPGDVIDLKRVRFSRKRFSEKQAEQWWAENRARVYELYNVRLID 156
EW+ Q EPGV+IT SLP DLKR+RFSR+ F++ QA++WW EN R+ ELYNV+ +
Sbjct: 133 EWMAQVEPGVHITFVSLPNGGNDLKRIRFSREMFNKWQAQKWWGENYDRIMELYNVQRFN 192
Query: 157 KSSIGVGS 164
+ ++ S
Sbjct: 193 RQALNTPS 200
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 53/89 (59%), Gaps = 8/89 (8%)
Query: 70 GHGKHSQSNAT---SRNGYKTKD-----NESRNETEWVEQDEPGVYITLTSLPGDVIDLK 121
G G H Q ++ SR ++D N S E+EWVEQDEPGVYIT+ L +L+
Sbjct: 244 GGGNHFQGGSSMEPSRATTSSRDEPSISNASEMESEWVEQDEPGVYITIRQLADGTRELR 303
Query: 122 RVRFSRKRFSEKQAEQWWAENRARVYELY 150
RVRFSR+RF E A+ WW +NR R+ Y
Sbjct: 304 RVRFSRERFGEVNAKTWWEDNRERIQAQY 332
>Medtr1g099220.1 | chromosome condensation regulator RCC1 repeat
protein | HC | chr1:44778263-44766991 | 20130731
Length = 1121
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/96 (52%), Positives = 65/96 (67%), Gaps = 1/96 (1%)
Query: 58 SNGSSTITNRSAGHGKHSQSNATSRNGYKTKDNESRNETEWVEQDEPGVYITLTSLPGDV 117
S+ S T R++G+ + +S + SRN N ++ E EW+EQ EPGVYITL ++
Sbjct: 1006 SSVSDTFDGRNSGNFRDDESGSRSRNDVLAA-NSNQVEAEWIEQYEPGVYITLVAMRDGT 1064
Query: 118 IDLKRVRFSRKRFSEKQAEQWWAENRARVYELYNVR 153
DL+RVRFSR+RF E QAE WW+ENR RVYE YNVR
Sbjct: 1065 RDLRRVRFSRRRFGENQAETWWSENRDRVYERYNVR 1100
>Medtr5g026970.1 | brevis RADIX-like protein | HC |
chr5:11177365-11173027 | 20130731
Length = 333
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 42/64 (65%)
Query: 97 EWVEQDEPGVYITLTSLPGDVIDLKRVRFSRKRFSEKQAEQWWAENRARVYELYNVRLID 156
EWV + EPGV +T SLP DLKR+RF+R+ F + QA WW EN R+ ELYNVR +
Sbjct: 134 EWVAEVEPGVDVTFLSLPDGGNDLKRIRFNREIFDKWQARVWWGENFDRLRELYNVRSFN 193
Query: 157 KSSI 160
++
Sbjct: 194 SQAL 197
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 57/103 (55%), Gaps = 5/103 (4%)
Query: 53 NDQLLSNGSSTITNRSAGHGKHSQSNA-----TSRNGYKTKDNESRNETEWVEQDEPGVY 107
ND ++ N + + G G S N +S + N S ++EW+EQ EPG++
Sbjct: 229 NDPMVGNQYFNPSGFTMGEGSSSNQNMHAALRSSSMNEISFSNSSDPDSEWIEQVEPGIF 288
Query: 108 ITLTSLPGDVIDLKRVRFSRKRFSEKQAEQWWAENRARVYELY 150
+T+ P +L+R++FSR+RF + +A +WW ENR R+ E Y
Sbjct: 289 VTVRQYPDGNNELRRIKFSRQRFGDAEARKWWDENRDRLREQY 331
>Medtr5g026970.2 | brevis RADIX-like protein | HC |
chr5:11177292-11173029 | 20130731
Length = 255
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 42/64 (65%)
Query: 97 EWVEQDEPGVYITLTSLPGDVIDLKRVRFSRKRFSEKQAEQWWAENRARVYELYNVRLID 156
EWV + EPGV +T SLP DLKR+RF+R+ F + QA WW EN R+ ELYNVR +
Sbjct: 56 EWVAEVEPGVDVTFLSLPDGGNDLKRIRFNREIFDKWQARVWWGENFDRLRELYNVRSFN 115
Query: 157 KSSI 160
++
Sbjct: 116 SQAL 119
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 57/103 (55%), Gaps = 5/103 (4%)
Query: 53 NDQLLSNGSSTITNRSAGHGKHSQSNA-----TSRNGYKTKDNESRNETEWVEQDEPGVY 107
ND ++ N + + G G S N +S + N S ++EW+EQ EPG++
Sbjct: 151 NDPMVGNQYFNPSGFTMGEGSSSNQNMHAALRSSSMNEISFSNSSDPDSEWIEQVEPGIF 210
Query: 108 ITLTSLPGDVIDLKRVRFSRKRFSEKQAEQWWAENRARVYELY 150
+T+ P +L+R++FSR+RF + +A +WW ENR R+ E Y
Sbjct: 211 VTVRQYPDGNNELRRIKFSRQRFGDAEARKWWDENRDRLREQY 253
>Medtr7g072410.1 | regulator of chromosome condensation (RCC1) family
protein | HC | chr7:26894031-26888474 | 20130731
Length = 1108
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 48/86 (55%), Gaps = 10/86 (11%)
Query: 75 SQSNATSRNGYKTKDNESRN----------ETEWVEQDEPGVYITLTSLPGDVIDLKRVR 124
S SN +R ++ +N+SR T+ V+Q EPGVY+TL P K V+
Sbjct: 964 SSSNTEARVASQSSENDSRTLNPSRSVREGNTQVVDQFEPGVYVTLIVRPDGKRLFKSVK 1023
Query: 125 FSRKRFSEKQAEQWWAENRARVYELY 150
FS+++F E QAE+WW N+ RV+ Y
Sbjct: 1024 FSKRKFREHQAEEWWTLNKDRVHARY 1049
>Medtr4g029410.1 | regulator of chromosome condensation (RCC1) family
protein, putative | HC | chr4:10165501-10157053 |
20130731
Length = 1045
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 58 SNGSSTITNRSAGHGKHSQSNATSRNGYKTKDNESRNETEWVEQDEPGVYITLTSLPGDV 117
SNGS S G Q++ S + +E ET++ E+ + GVY LT +
Sbjct: 930 SNGSCEF---SVGEEVSPQNSENSSTSLDSSRHERPPETQFFEKFQSGVYALLTLRADGI 986
Query: 118 IDLKRVRFSRKRFSEKQAEQWWAENRARVYELY 150
KRV+FS++RF++ QAE+WW +N+ RV Y
Sbjct: 987 KIFKRVKFSKRRFTDTQAEEWWRQNKGRVLRKY 1019
>Medtr1g042800.1 | chromosome condensation regulator RCC1 repeat
protein | HC | chr1:16011888-16018401 | 20130731
Length = 1076
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 43/66 (65%)
Query: 95 ETEWVEQDEPGVYITLTSLPGDVIDLKRVRFSRKRFSEKQAEQWWAENRARVYELYNVRL 154
ET +EQ E GVYIT + KRVRFSR+RFSE+QAE+WW+ N+ RVY YN
Sbjct: 990 ETSVIEQFERGVYITAIVIADGSKIFKRVRFSRRRFSEQQAEEWWSNNKDRVYRRYNPPP 1049
Query: 155 IDKSSI 160
I+ SI
Sbjct: 1050 INNESI 1055