Miyakogusa Predicted Gene

Lj0g3v0267359.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0267359.1 Non Characterized Hit- tr|A5BC22|A5BC22_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,37.04,3e-18,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
Ribonuclease H-like,Ribonuclease H-like domain; ZF_,gene.g20750.t1.1
         (635 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g089885.1 | hypothetical protein | LC | chr2:38012649-3801...    55   2e-07
Medtr6g060670.2 | DUF296 domain protein | HC | chr6:21028299-210...    51   4e-06
Medtr6g060670.1 | DUF296 domain protein | HC | chr6:21028299-210...    51   4e-06
Medtr6g060670.3 | DUF296 domain protein | HC | chr6:21028299-210...    51   4e-06

>Medtr2g089885.1 | hypothetical protein | LC |
           chr2:38012649-38011743 | 20130731
          Length = 180

 Score = 55.5 bits (132), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/100 (35%), Positives = 50/100 (50%), Gaps = 10/100 (10%)

Query: 53  AVNLTPLRSLGYIDP--------GWEHGVAQDERKKKVKCNYCEKVVSGGINRFKQHLAR 104
           + +LTP  + GY  P        GW     +DE KK + C++C    +GGI R K+    
Sbjct: 6   SASLTP-TAKGYFKPIHRKSTDIGWRWSSYKDESKKIILCDFCGHP-TGGITRAKKLQLG 63

Query: 105 IPGEVAPCKKAPEEVYLKIKENMKWHRTGRRHRRPEAKEL 144
           I GEV PC+K PEEV + +K +    +  +      AKEL
Sbjct: 64  IKGEVKPCEKTPEEVKILLKNHFDGKQAAKDASSGPAKEL 103


>Medtr6g060670.2 | DUF296 domain protein | HC |
           chr6:21028299-21024961 | 20130731
          Length = 305

 Score = 50.8 bits (120), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 1/63 (1%)

Query: 63  GYIDPGWEHGVAQDERKKKVKCNYCEKVVSGGINRFKQHLARIPG-EVAPCKKAPEEVYL 121
           G  D GW     +DE +K + C++C    +GGI R K H   I G EV PC+K PE+V +
Sbjct: 21  GSTDIGWWWNSFKDENQKTIVCHFCGHPSTGGITRAKYHQLGIKGREVKPCEKTPEDVKI 80

Query: 122 KIK 124
            +K
Sbjct: 81  LLK 83


>Medtr6g060670.1 | DUF296 domain protein | HC |
           chr6:21028299-21024961 | 20130731
          Length = 305

 Score = 50.8 bits (120), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 1/63 (1%)

Query: 63  GYIDPGWEHGVAQDERKKKVKCNYCEKVVSGGINRFKQHLARIPG-EVAPCKKAPEEVYL 121
           G  D GW     +DE +K + C++C    +GGI R K H   I G EV PC+K PE+V +
Sbjct: 21  GSTDIGWWWNSFKDENQKTIVCHFCGHPSTGGITRAKYHQLGIKGREVKPCEKTPEDVKI 80

Query: 122 KIK 124
            +K
Sbjct: 81  LLK 83


>Medtr6g060670.3 | DUF296 domain protein | HC |
           chr6:21028299-21024961 | 20130731
          Length = 305

 Score = 50.8 bits (120), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 1/63 (1%)

Query: 63  GYIDPGWEHGVAQDERKKKVKCNYCEKVVSGGINRFKQHLARIPG-EVAPCKKAPEEVYL 121
           G  D GW     +DE +K + C++C    +GGI R K H   I G EV PC+K PE+V +
Sbjct: 21  GSTDIGWWWNSFKDENQKTIVCHFCGHPSTGGITRAKYHQLGIKGREVKPCEKTPEDVKI 80

Query: 122 KIK 124
            +K
Sbjct: 81  LLK 83