Miyakogusa Predicted Gene
- Lj0g3v0266889.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0266889.1 Non Characterized Hit- tr|D8T1H0|D8T1H0_SELML
Putative uncharacterized protein EMBL1692-2
OS=Selagin,30.89,0.00000000000007,PORR,Plant organelle RNA recognition
domain; SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
seg,NU,CUFF.17608.1
(519 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr7g117270.1 | plant organelle RNA recognition domain protein... 597 e-170
Medtr3g083350.1 | plant organelle RNA recognition domain protein... 202 9e-52
Medtr3g105530.1 | plant organelle RNA recognition domain protein... 173 4e-43
Medtr3g074730.1 | plant organelle RNA recognition domain protein... 150 3e-36
Medtr1g072550.1 | plant organelle RNA recognition domain protein... 144 2e-34
Medtr1g072550.2 | plant organelle RNA recognition domain protein... 144 2e-34
Medtr1g032380.1 | plant organelle RNA recognition domain protein... 144 2e-34
Medtr1g032040.1 | plant organelle RNA recognition domain protein... 144 2e-34
Medtr0153s0070.2 | plant organelle RNA recognition domain protei... 136 6e-32
Medtr0153s0070.1 | plant organelle RNA recognition domain protei... 124 2e-28
Medtr6g033595.1 | plant organelle RNA recognition domain protein... 122 1e-27
Medtr7g088530.1 | plant organelle RNA recognition domain protein... 119 9e-27
Medtr8g089370.2 | plant organelle RNA recognition domain protein... 119 1e-26
Medtr8g089370.1 | plant organelle RNA recognition domain protein... 119 1e-26
Medtr3g029990.2 | ubiquitin carboxyl-terminal hydrolase family p... 115 9e-26
Medtr3g029990.1 | ubiquitin carboxyl-terminal hydrolase family p... 115 1e-25
Medtr1g019170.4 | plant organelle RNA recognition domain protein... 114 2e-25
Medtr1g019170.3 | plant organelle RNA recognition domain protein... 114 2e-25
Medtr1g019170.1 | plant organelle RNA recognition domain protein... 114 2e-25
Medtr1g019170.2 | plant organelle RNA recognition domain protein... 114 2e-25
Medtr3g030020.1 | plant organelle RNA recognition domain protein... 110 3e-24
Medtr4g053720.1 | plant organelle RNA recognition domain protein... 108 1e-23
Medtr1g098960.1 | plant organelle RNA recognition domain protein... 105 1e-22
Medtr7g107280.1 | plant organelle RNA recognition domain protein... 104 2e-22
Medtr3g063230.1 | plant organelle RNA recognition domain protein... 102 6e-22
Medtr7g018630.1 | plant organelle RNA recognition domain protein... 100 4e-21
Medtr2g067960.1 | plant organelle RNA recognition domain protein... 98 2e-20
Medtr6g043850.1 | plant organelle RNA recognition domain protein... 97 4e-20
Medtr3g063230.2 | plant organelle RNA recognition domain protein... 84 2e-16
Medtr3g448960.1 | plant organelle RNA recognition domain protein... 76 7e-14
Medtr8g102038.1 | plant organelle RNA recognition domain protein... 61 3e-09
>Medtr7g117270.1 | plant organelle RNA recognition domain protein |
HC | chr7:48441549-48444050 | 20130731
Length = 530
Score = 597 bits (1538), Expect = e-170, Method: Compositional matrix adjust.
Identities = 295/401 (73%), Positives = 335/401 (83%), Gaps = 2/401 (0%)
Query: 16 TPLPFFISNRLPFLQRPKPSVKLRCSLQNSQFWGRNLSLVSSQRSVCNPPL--RIGPIRA 73
TPLPFFISN+L FLQ+P S+KL SL+ SQF G NL L S S +I PI A
Sbjct: 23 TPLPFFISNKLHFLQKPNFSLKLHSSLKKSQFLGTNLRLFQSNSSHVGGTRFNKIMPISA 82
Query: 74 AVKRRKEMPFDNVIQRDKKLKFVLRVRKILVSQPDRVMSLKELGKYKRELGLDRKRRLIA 133
AVKRRKE+PFDNVIQ+DKKLKFVL+VRKILVS+P RVMSL+ELGKY+RELGLD+KR+LI
Sbjct: 83 AVKRRKELPFDNVIQKDKKLKFVLKVRKILVSKPTRVMSLQELGKYRRELGLDKKRKLIV 142
Query: 134 LLRKFPAVFEIMEEGVFSLKFKMTPEADRLYLEELRVRNEMEDXXXXXXXXXXXXXXEKR 193
+LR+FP VFEI+E+G +SLKFKMT EA++LYLEELRVRNEMED EKR
Sbjct: 143 ILRRFPGVFEIVEDGCYSLKFKMTSEAEKLYLEELRVRNEMEDVVVTKLRKLLMMPLEKR 202
Query: 194 ILLEKIAHLGADLGLPQDFRETICHSYPQYFKVVATERGPALELTHWDPXXXXXXXXXXX 253
ILLEKI HL DLGLP++FR+TICH YP++FKVV TERGPALELTHWDP
Sbjct: 203 ILLEKIGHLANDLGLPREFRDTICHRYPEFFKVVQTERGPALELTHWDPHLAVSAAELSA 262
Query: 254 XXNRIRELEEQNLIIDRTPKFNRVKLPKGLNLSKGEMRRIMQFRDLPYISPYADFSMLTS 313
NRIRE+EEQNLIIDR PKFNRVKLPKGL+LSKGEMR+IMQFRD+PYISPY+DFSM+
Sbjct: 263 EENRIREVEEQNLIIDRAPKFNRVKLPKGLSLSKGEMRKIMQFRDIPYISPYSDFSMIGL 322
Query: 314 GTREKEKHACGVVHEILSLTLEKRTLVDHFTHFREEFRFSQQLRGMLIRHPDMFYVSLKG 373
T EKEKHACGV+HEILSLTLEKRTLVD+FTHFREEFRFSQQLRGMLIRHPDMFY+SLKG
Sbjct: 323 NTPEKEKHACGVIHEILSLTLEKRTLVDNFTHFREEFRFSQQLRGMLIRHPDMFYISLKG 382
Query: 374 DRDSVFLREGYRNSQLMEKDRLLLIKEKLRSLVNVPRFPKG 414
DRDSVFLRE YR+SQL++KDRLLL+KEKLRSLV++PRFPKG
Sbjct: 383 DRDSVFLREAYRDSQLVDKDRLLLVKEKLRSLVDIPRFPKG 423
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 31/39 (79%)
Query: 481 AGTLEISQRKTINQVEDSEPNNEKVLVPTLPDGRPREQW 519
A T EI +RKTI +V+D+ NNEKVLVP+ PDGR RE+W
Sbjct: 492 AETSEIEKRKTITRVQDARQNNEKVLVPSFPDGRTRERW 530
>Medtr3g083350.1 | plant organelle RNA recognition domain protein |
HC | chr3:37619083-37621215 | 20130731
Length = 568
Score = 202 bits (513), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 119/340 (35%), Positives = 191/340 (56%), Gaps = 32/340 (9%)
Query: 85 NVIQRDKKLKFVLRVRKILVSQPDRVMSLKELGKYKRELGLDRKRRLIALLRKFPAVFEI 144
+V+ R++ ++FV +++ +L+S+P + +K L K + L L + R L++++ ++P++FE+
Sbjct: 65 HVVMRNR-IRFVQKLKTLLLSKPKHFLPIKILSKCRAYLSLHKPRSLLSMIHRYPSIFEL 123
Query: 145 MEEGVFSLKFKMTP-EADRLY---------------LEELRVRNEMEDXXXXXXXXXXXX 188
F++ + TP A +LY EEL +++ +
Sbjct: 124 -----FTIPWPPTPLNATKLYPQLCVRLTPAAAALAAEELNLKSSISTVLANKLQKLLML 178
Query: 189 XXEKRILLEKIAHLGADLGLPQDFRETICHSYPQYFKVVATERGPALELTHWDPXXXXXX 248
+R+LL K+ HL DLGLP +FR +C+ +P FK+V T G ALEL WD
Sbjct: 179 SSHRRLLLAKLVHLAPDLGLPPNFRSRLCNDHPDKFKIVDTSYGRALELVSWDTNLAKPL 238
Query: 249 XXXXXXXNRIRELEEQNLIIDRTPKFNRVKLPKGLNLSKGEMRRIMQFRDLPYISPYAD- 307
RE +LI+DR KF +++L KGLNL + +++F ++P + PY +
Sbjct: 239 PP--------RESHSLDLIVDRPLKFKQLRLRKGLNLKRPHRDYLLKFEEMPEVCPYNNP 290
Query: 308 FSMLTSGTREKEKHACGVVHEILSLTLEKRTLVDHFTHFREEFRFSQQLRGMLIRHPDMF 367
T + E EK C V+ E+L +T+EKRTL+DH THFR+EF +LRGM++RHP++F
Sbjct: 291 AESSTKESIEAEKRCCAVIREVLGMTIEKRTLIDHLTHFRKEFGLPNKLRGMIVRHPELF 350
Query: 368 YVSLKGDRDSVFLREGY-RNSQLMEKDRLLLIKEKLRSLV 406
Y SLKG RDSVFL E + L+EKD +L +++K L
Sbjct: 351 YTSLKGQRDSVFLVERFDEKGNLLEKDEVLALQDKWMDLA 390
>Medtr3g105530.1 | plant organelle RNA recognition domain protein |
HC | chr3:48661486-48663294 | 20130731
Length = 431
Score = 173 bits (438), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 116/323 (35%), Positives = 170/323 (52%), Gaps = 30/323 (9%)
Query: 101 KILVSQPDRVMSLKELGKYKRELGLDRKRRLIALLRKFPAVFEIMEEGVFSLKFKMTPEA 160
++L +P+ V+ ++ L Y++++ L + R+ LRK P +FE+ ++ L +T +A
Sbjct: 60 ELLEQEPEIVIPVRSLSHYRKQISLPKPHRISDFLRKTPKLFELYKDRNGVLWCGLTQKA 119
Query: 161 DRLYLEELRVRNEMEDXXXXXXXXXXXXXXEKRILLEKIAHLGADLGLPQDFRETICHSY 220
+ L E RV E ED +KR+ L+KIAH D GLP DFR H Y
Sbjct: 120 EVLMEEHKRVIEENEDKAAEYVTRLLMMSVDKRVQLDKIAHFRRDFGLPMDFRTHWVHKY 179
Query: 221 PQYFKVV--ATERGPALELTHWDPXXXXXXXXXXXXXNRIRELEEQNLII-------DRT 271
PQ F+VV + + LEL W+ I E+E++N +I + T
Sbjct: 180 PQLFRVVKPSLDDVEFLELVSWNSEWA------------ITEIEKKNKMILEGVTETEHT 227
Query: 272 PKFNRVKLP-------KGLNLSKGEMRRIMQFRDLPYISPYADFSMLTSGTREKEKHACG 324
P + P K ++ GE +I F++ Y+SPYAD L G+ E +K A
Sbjct: 228 PGLLSLPFPLKFPANFKRVHSYYGE--KIKMFQERTYLSPYADAKGLKPGSLEFDKRAVA 285
Query: 325 VVHEILSLTLEKRTLVDHFTHFREEFRFSQQLRGMLIRHPDMFYVSLKGDRDSVFLREGY 384
V+HE+LS T+EKR + DH THFR E Q+L +L++H +FYVS +G R SVFL E Y
Sbjct: 286 VMHELLSFTVEKRLVTDHLTHFRWELVMPQKLMRLLLKHCGIFYVSERGKRFSVFLTEAY 345
Query: 385 RNSQLMEKDRLLLIKEKLRSLVN 407
S+L+EK L L +EKL SLV
Sbjct: 346 EGSELIEKSPLFLWREKLLSLVG 368
>Medtr3g074730.1 | plant organelle RNA recognition domain protein |
HC | chr3:33769164-33767587 | 20130731
Length = 404
Score = 150 bits (379), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 107/352 (30%), Positives = 166/352 (47%), Gaps = 25/352 (7%)
Query: 67 RIGPIRAAVKRRKEMPFDNVIQRDKKLKFVLRVRKILVSQPDRVMSLKELGKYKRELGLD 126
R PI+ R F+ +++R+ ++FV R + L +QP+ V+ L + GK RELG
Sbjct: 49 RTNPIQTEPNRV--TAFEQIVKRETLMRFVTRSKNYLSNQPEHVLQLDDAGKLHRELGFP 106
Query: 127 RKRRLIALLRKFPAVFEIMEEGVFSLKFKMTPEADRLYLEELRVRNEMEDXXXXXXXXXX 186
R R++ +++ P +F + F T + L EE + ME
Sbjct: 107 RGRKIAKSIQQHPPLFLTYRHTDGKMWFGFTDLMEELLAEEKSIMESMELDRVEKVRKLL 166
Query: 187 XXXXEKRILLEKIAHLGADLGLPQDFRETICHSYPQYFKVVATERGP------ALELTHW 240
RI L KI H+ G+P DFR+ + YP YF++V + LEL +W
Sbjct: 167 MMSRFHRISLAKIHHVRNLFGIPDDFRDRV-EKYPNYFRIVDDKNKDDGKKVRVLELVNW 225
Query: 241 DPXXXXXXXXXXXXXNRIRELEEQNLI--IDRTPKFNR-VKLPKGLNLSKGEMRRIMQFR 297
DP + +E++ ++ D KF VK K L L + R++
Sbjct: 226 DPLLA------------VSAIEKEFMVNEDDAKRKFTFPVKHGKDLELGIEDERKMNLLN 273
Query: 298 DLPYISPYADFSMLTSGTREKEKHACGVVHEILSLTLEKRTLVDHFTHFREEFRFSQQLR 357
LP +SPY+D + T E EK+ G++HE LSLTLEKR + H F+EEF ++
Sbjct: 274 ALPLVSPYSDGAKFDVWTLEAEKYRVGLIHEFLSLTLEKRASIHHLVEFKEEFSLTKHTY 333
Query: 358 GMLIRHPDMFYVSLKGDRDSVFLREGY-RNSQLMEKDRLLLIKEKLRSLVNV 408
ML++ P FY++ VFL+EGY RN L+ KD ++ EK+ +
Sbjct: 334 HMLVKQPRAFYLAGTEMNWVVFLKEGYDRNGVLIHKDPQVVFNEKVYKYAQI 385
>Medtr1g072550.1 | plant organelle RNA recognition domain protein |
HC | chr1:32201119-32198282 | 20130731
Length = 393
Score = 144 bits (364), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 106/336 (31%), Positives = 166/336 (49%), Gaps = 16/336 (4%)
Query: 78 RKEMPFDNVIQRDKKLKFVLRVRKILVSQPDRVMSLKELGKYKRELGLDRKRRLIALLRK 137
RK+ D I++DK+ K RV K ++++P +V+ L+ L K ++ + L K ++ L +
Sbjct: 36 RKDQSLDQAIEQDKRFKQCARVVKEVLNEPGQVIPLRYLEKRRQRMRL--KVKIDTFLNQ 93
Query: 138 FPAVFEIMEEGVFS----LKF-KMTPEADRLYLEELRVRNEMEDXXXXXXXXXXXXXXEK 192
P +F++ + + +KF +++ + EE R+ E E +K
Sbjct: 94 NPFLFDVYYDRIKPKTEPVKFLRVSDHLLQFLQEEKRIYKENEPLIVSKLCKLLMMSKDK 153
Query: 193 RILLEKIAHLGADLGLPQDFRETICHSYPQYFKVVA--TERGPALELTHWDPXXXXXXXX 250
+ +K+ H+ + G P DF + YP+YF++ E LEL +W+P
Sbjct: 154 IVSADKLLHVKREFGFPNDFLVDLVPRYPEYFRLTGLPGEGKSFLELVNWNPEFAKSVI- 212
Query: 251 XXXXXNRIRELEEQNLIIDRTPKFNRVKLPKGLNLSKGEMRRIMQFRDLPYISPYADFSM 310
R E E + I P FN VKLP G L K I + +L Y+SPY D S
Sbjct: 213 -----ERRAEEESRATGIRVRPSFN-VKLPPGFVLKKEMREWIRDWMELDYVSPYEDVSH 266
Query: 311 LTSGTREKEKHACGVVHEILSLTLEKRTLVDHFTHFREEFRFSQQLRGMLIRHPDMFYVS 370
L +RE EK + GV HE+LSL+L KR V F +E+RFS RH +FY+S
Sbjct: 267 LEQASREMEKRSVGVFHELLSLSLYKRVPVPILGKFCDEYRFSNAFSSAFTRHSGIFYMS 326
Query: 371 LKGDRDSVFLREGYRNSQLMEKDRLLLIKEKLRSLV 406
LKG ++ LRE Y +L++ D LL IK++ L+
Sbjct: 327 LKGGIETAMLREAYDGDKLIDIDPLLQIKDRFAELL 362
>Medtr1g072550.2 | plant organelle RNA recognition domain protein |
HC | chr1:32201119-32199304 | 20130731
Length = 393
Score = 144 bits (364), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 106/336 (31%), Positives = 166/336 (49%), Gaps = 16/336 (4%)
Query: 78 RKEMPFDNVIQRDKKLKFVLRVRKILVSQPDRVMSLKELGKYKRELGLDRKRRLIALLRK 137
RK+ D I++DK+ K RV K ++++P +V+ L+ L K ++ + L K ++ L +
Sbjct: 36 RKDQSLDQAIEQDKRFKQCARVVKEVLNEPGQVIPLRYLEKRRQRMRL--KVKIDTFLNQ 93
Query: 138 FPAVFEIMEEGVFS----LKF-KMTPEADRLYLEELRVRNEMEDXXXXXXXXXXXXXXEK 192
P +F++ + + +KF +++ + EE R+ E E +K
Sbjct: 94 NPFLFDVYYDRIKPKTEPVKFLRVSDHLLQFLQEEKRIYKENEPLIVSKLCKLLMMSKDK 153
Query: 193 RILLEKIAHLGADLGLPQDFRETICHSYPQYFKVVA--TERGPALELTHWDPXXXXXXXX 250
+ +K+ H+ + G P DF + YP+YF++ E LEL +W+P
Sbjct: 154 IVSADKLLHVKREFGFPNDFLVDLVPRYPEYFRLTGLPGEGKSFLELVNWNPEFAKSVI- 212
Query: 251 XXXXXNRIRELEEQNLIIDRTPKFNRVKLPKGLNLSKGEMRRIMQFRDLPYISPYADFSM 310
R E E + I P FN VKLP G L K I + +L Y+SPY D S
Sbjct: 213 -----ERRAEEESRATGIRVRPSFN-VKLPPGFVLKKEMREWIRDWMELDYVSPYEDVSH 266
Query: 311 LTSGTREKEKHACGVVHEILSLTLEKRTLVDHFTHFREEFRFSQQLRGMLIRHPDMFYVS 370
L +RE EK + GV HE+LSL+L KR V F +E+RFS RH +FY+S
Sbjct: 267 LEQASREMEKRSVGVFHELLSLSLYKRVPVPILGKFCDEYRFSNAFSSAFTRHSGIFYMS 326
Query: 371 LKGDRDSVFLREGYRNSQLMEKDRLLLIKEKLRSLV 406
LKG ++ LRE Y +L++ D LL IK++ L+
Sbjct: 327 LKGGIETAMLREAYDGDKLIDIDPLLQIKDRFAELL 362
>Medtr1g032380.1 | plant organelle RNA recognition domain protein |
HC | chr1:11495605-11496780 | 20130731
Length = 391
Score = 144 bits (363), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 106/340 (31%), Positives = 164/340 (48%), Gaps = 16/340 (4%)
Query: 75 VKRRKEMPFDNVIQRDKKLKFVLRVRKILVSQPDRVMSLKELGKYKRELGLDRKRRLIAL 134
V RK+ D I++DK+ K RV K ++++P +V+ L+ L K ++ + L K ++
Sbjct: 33 VVWRKDPSLDQAIEQDKRFKQCFRVVKEVLNEPGQVIPLRYLEKRRQRMRL--KVKIDTF 90
Query: 135 LRKFPAVFEIMEEGVFS----LKF-KMTPEADRLYLEELRVRNEMEDXXXXXXXXXXXXX 189
L + P +F++ + + +KF +++ + EE R+ E E
Sbjct: 91 LNQNPFLFDVYYDRIKPKTKPVKFLRVSDHLLQFLEEEKRIYKENEPLIVSKLCKLLMMS 150
Query: 190 XEKRILLEKIAHLGADLGLPQDFRETICHSYPQYFKVVA--TERGPALELTHWDPXXXXX 247
+K + +K+ H+ + G P DF + YP+YF++ E LEL +W+P
Sbjct: 151 KDKVVSADKLLHVKREFGFPNDFLVDLVPRYPEYFRLTGLPGEGKSFLELVNWNPEFAKS 210
Query: 248 XXXXXXXXNRIRELEEQNLIIDRTPKFNRVKLPKGLNLSKGEMRRIMQFRDLPYISPYAD 307
E E I P FN VKLP G L K I + +L Y+SPY D
Sbjct: 211 VVEKRA------EEESSATGIRVRPSFN-VKLPPGFVLKKEMREWIRDWMELDYVSPYED 263
Query: 308 FSMLTSGTREKEKHACGVVHEILSLTLEKRTLVDHFTHFREEFRFSQQLRGMLIRHPDMF 367
S +RE EK + GV HE+LSL+L KR V F +E+RFS RH +F
Sbjct: 264 VSHFEQSSREMEKRSVGVFHELLSLSLYKRIPVPILGKFCDEYRFSNAFSSAFTRHSGIF 323
Query: 368 YVSLKGDRDSVFLREGYRNSQLMEKDRLLLIKEKLRSLVN 407
Y+SLKG ++ LRE Y +L+ D LL IK++ L+N
Sbjct: 324 YLSLKGGIETAMLREAYEGDKLIHIDPLLQIKDRFAELLN 363
>Medtr1g032040.1 | plant organelle RNA recognition domain protein |
HC | chr1:11336962-11338761 | 20130731
Length = 391
Score = 144 bits (363), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 106/340 (31%), Positives = 164/340 (48%), Gaps = 16/340 (4%)
Query: 75 VKRRKEMPFDNVIQRDKKLKFVLRVRKILVSQPDRVMSLKELGKYKRELGLDRKRRLIAL 134
V RK+ D I++DK+ K RV K ++++P +V+ L+ L K ++ + L K ++
Sbjct: 33 VVWRKDPSLDQAIEQDKRFKQCFRVVKEVLNEPGQVIPLRYLEKRRQRMRL--KVKIDTF 90
Query: 135 LRKFPAVFEIMEEGVFS----LKF-KMTPEADRLYLEELRVRNEMEDXXXXXXXXXXXXX 189
L + P +F++ + + +KF +++ + EE R+ E E
Sbjct: 91 LNQNPFLFDVYYDRIKPKTKPVKFLRVSDHLLQFLEEEKRIYKENEPLIVSKLCKLLMMS 150
Query: 190 XEKRILLEKIAHLGADLGLPQDFRETICHSYPQYFKVVA--TERGPALELTHWDPXXXXX 247
+K + +K+ H+ + G P DF + YP+YF++ E LEL +W+P
Sbjct: 151 KDKVVSADKLLHVKREFGFPNDFLVDLVPRYPEYFRLTGLPGEGKSFLELVNWNPEFAKS 210
Query: 248 XXXXXXXXNRIRELEEQNLIIDRTPKFNRVKLPKGLNLSKGEMRRIMQFRDLPYISPYAD 307
E E I P FN VKLP G L K I + +L Y+SPY D
Sbjct: 211 VVEKRA------EEESSATGIRVRPSFN-VKLPPGFVLKKEMREWIRDWMELDYVSPYED 263
Query: 308 FSMLTSGTREKEKHACGVVHEILSLTLEKRTLVDHFTHFREEFRFSQQLRGMLIRHPDMF 367
S +RE EK + GV HE+LSL+L KR V F +E+RFS RH +F
Sbjct: 264 VSHFEQSSREMEKRSVGVFHELLSLSLYKRIPVPILGKFCDEYRFSNAFSSAFTRHSGIF 323
Query: 368 YVSLKGDRDSVFLREGYRNSQLMEKDRLLLIKEKLRSLVN 407
Y+SLKG ++ LRE Y +L+ D LL IK++ L+N
Sbjct: 324 YLSLKGGIETAMLREAYEGDKLIHIDPLLQIKDRFAELLN 363
>Medtr0153s0070.2 | plant organelle RNA recognition domain protein |
HC | scaffold0153:34902-38440 | 20130731
Length = 335
Score = 136 bits (342), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 93/283 (32%), Positives = 143/283 (50%), Gaps = 30/283 (10%)
Query: 101 KILVSQPDRVMSLKELGKYKRELGLDRKRRLIALLRKFPAVFEIMEEGVFSLKFKMTPEA 160
++L +P+ V+ ++ L Y++++ L + R+ LRK P +FE+ ++ L +T +A
Sbjct: 67 ELLEQEPEIVIPVRSLSHYRKQISLPKPHRISDFLRKTPKLFELYKDRNGVLWCGLTQKA 126
Query: 161 DRLYLEELRVRNEMEDXXXXXXXXXXXXXXEKRILLEKIAHLGADLGLPQDFRETICHSY 220
+ L E RV E ED +KR+ L+KIAH D GLP DFR H Y
Sbjct: 127 EVLMEEHKRVIEENEDKAAEYVTRLLMMSVDKRVQLDKIAHFRRDFGLPMDFRTHWVHKY 186
Query: 221 PQYFKVV--ATERGPALELTHWDPXXXXXXXXXXXXXNRIRELEEQNLII-------DRT 271
PQ F+VV + + LEL W+ I E+E++N +I + T
Sbjct: 187 PQLFRVVKPSLDDVEFLELVSWNSEWA------------ITEIEKKNKMIMEGVTETEHT 234
Query: 272 PKFNRVKLP-------KGLNLSKGEMRRIMQFRDLPYISPYADFSMLTSGTREKEKHACG 324
P + P K ++ GE +I F++ Y+SPYAD L G+ E +K A
Sbjct: 235 PGLLSLPFPLKFPANFKRVHSYYGE--KIKMFQERTYLSPYADAKGLKPGSLEFDKRAVA 292
Query: 325 VVHEILSLTLEKRTLVDHFTHFREEFRFSQQLRGMLIRHPDMF 367
V+HE+LS T+EKR + DH THFR E Q+L +L++H +F
Sbjct: 293 VMHELLSFTVEKRLVTDHLTHFRWELVMPQKLMRLLLKHCGIF 335
>Medtr0153s0070.1 | plant organelle RNA recognition domain protein |
HC | scaffold0153:36398-37624 | 20130731
Length = 373
Score = 124 bits (312), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 101/323 (31%), Positives = 148/323 (45%), Gaps = 65/323 (20%)
Query: 101 KILVSQPDRVMSLKELGKYKRELGLDRKRRLIALLRKFPAVFEIMEEGVFSLKFKMTPEA 160
++L +P+ V+ ++ L Y++++ L + R+ LRK P +FE+ ++ L +T +A
Sbjct: 37 ELLEQEPEIVIPVRSLSHYRKQISLPKPHRISDFLRKTPKLFELYKDRNGVLWCGLTQKA 96
Query: 161 DRLYLEELRVRNEMEDXXXXXXXXXXXXXXEKRILLEKIAHLGADLGLPQDFRETICHSY 220
+ L E RV E ED +KR+ L+KIAH D GLP DFR H Y
Sbjct: 97 EVLMEEHKRVIEENEDKAAEYVTRLLMMSVDKRVQLDKIAHFRRDFGLPMDFRTHWVHKY 156
Query: 221 PQYFKVV--ATERGPALELTHWDPXXXXXXXXXXXXXNRIRELEEQNLII-------DRT 271
PQ F+VV + + LEL W+ I E+E++N +I + T
Sbjct: 157 PQLFRVVKPSLDDVEFLELVSWNSEWA------------ITEIEKKNKMIMEGVTETEHT 204
Query: 272 PKFNRVKLP-------KGLNLSKGEMRRIMQFRDLPYISPYADFSMLTSGTREKEKHACG 324
P + P K ++ GE +I F++ Y+SPYAD L G+ E +K A
Sbjct: 205 PGLLSLPFPLKFPANFKRVHSYYGE--KIKMFQERTYLSPYADAKGLKPGSLEFDKRAVA 262
Query: 325 VVHEILSLTLEKRTLVDHFTHFREEFRFSQQLRGMLIRHPDMFYVSLKGDRDSVFLREGY 384
V+HE+LS T+EKR G R SVFL E Y
Sbjct: 263 VMHELLSFTVEKR-----------------------------------GKRFSVFLTEAY 287
Query: 385 RNSQLMEKDRLLLIKEKLRSLVN 407
S+L+EK L L +EKL SLV
Sbjct: 288 EGSELIEKSPLFLWREKLLSLVG 310
>Medtr6g033595.1 | plant organelle RNA recognition domain protein |
HC | chr6:10945964-10948263 | 20130731
Length = 466
Score = 122 bits (305), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 103/381 (27%), Positives = 180/381 (47%), Gaps = 26/381 (6%)
Query: 45 SQFWGRNLSLVSSQRSVCNPPL-------RIGPIRAAVKRRKEMPFDNVIQRDKKLKFVL 97
S F+ +NL L+ + NP + I +R ++ +DN ++ +KK + VL
Sbjct: 9 SNFFKQNLQLIHHHQYNPNPNFSSIREFSQSTSIPKKQQRIRDHGYDNYMEIEKKTRKVL 68
Query: 98 RVRKILVSQPDRVMSLKELGKYKRELGLDRKRRLIALLRKFPAVFEIMEEGVFSLKFKMT 157
+ + +++S+P++ + + L +G R IA + KF VFEI E V + F
Sbjct: 69 KFQNLILSEPNQSIPISRLETQAHRIGFTR-HEAIAFILKFLHVFEIFEHPVQRILFCRL 127
Query: 158 PEADRLYLEELRVR-NEMEDXXXXXXXXXXXXXXEKRILLEKIAHLGADLGLPQDFRETI 216
L +E+ R+ + + R+ LE + + LGLP DF ++
Sbjct: 128 TRKAILQIEQERLALADQVERAVTRLRKMIMMSNGLRLRLEHVRIARSALGLPDDFEYSV 187
Query: 217 CHSYPQYFKVVATE--RGPALELTHWDPXXXX-XXXXXXXXXNRIRELEEQNLIIDRTPK 273
YP++F++V + R +EL +DP R R E +++ +
Sbjct: 188 VLRYPEFFRLVDAKETRNKYIELVEFDPKLAKCAIEDARERVYRERGSEAEDI------R 241
Query: 274 FN-RVKLPKGLNLSKGEMRRIMQFRDLPYISPYAD---FSMLT-SGTREKEKHACGVVHE 328
F+ + P G +SK + +++ LPY SPY D + + + + EK A +HE
Sbjct: 242 FSFLIDFPPGFKISKYFRIAMWKWQRLPYWSPYEDVLGYDLRSIEAQKRMEKRAVATIHE 301
Query: 329 ILSLTLEKRTLVDHFTHFREEFRFSQQLRGMLIRHPDMFYVSLKGDR---DSVFLREGYR 385
+LSLT+EK+ ++ HFR ++L+ L++H +FYVS +G+ +VFLRE Y
Sbjct: 302 LLSLTVEKKITLERIAHFRMAMNLPKKLKEFLLQHQGIFYVSTRGNHGKLHTVFLREAYS 361
Query: 386 NSQLMEKDRLLLIKEKLRSLV 406
+L+E + L L + KL LV
Sbjct: 362 KGELVEPNDLYLARRKLVELV 382
>Medtr7g088530.1 | plant organelle RNA recognition domain protein |
HC | chr7:34489084-34490337 | 20130731
Length = 417
Score = 119 bits (297), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 92/337 (27%), Positives = 155/337 (45%), Gaps = 13/337 (3%)
Query: 77 RRKEMPFDNVIQRDKKLKFVLRVRKILVSQP-DRVMSLKELGKYKRELGLDRKRRLIALL 135
R ++ FD + KKL VL+ R ++ ++ +SL+ + ++K GL+ + + L
Sbjct: 46 RIRDTHFDKLTTHFKKLSLVLKTRNLISNRKRGSFVSLQLMSRWKNITGLNVT--VTSFL 103
Query: 136 RKFPAVFEIMEEGVF-SLKFKMTPEADRLYLEELRVRNEMEDXXXXXXXXXXXXXXEKRI 194
+K+P VF + ++ +MT + L L E V + E +
Sbjct: 104 QKYPHVFYLFVHPFRRNMCCRMTKKMKELILLEEVVVRQHEVEVVKRVKKLLMMSVNGTL 163
Query: 195 LLEKIAHLGADLGLPQDFRETICHSYPQYFKVVATERGPALELTHWDPXXXXXXXXXXXX 254
L + + +LGLP DFRE+I Y F++V E + L WD
Sbjct: 164 HLHALRLIRRELGLPCDFRESILGRYSDEFRLVDLE---IVALVGWDDELGMARVEEWRE 220
Query: 255 XNRIRELEEQNLIIDRTPKFNR-VKLPKGLNLSKGEMRRIMQFRDLPYISPYADFSMLTS 313
+ + + KF + P G + +G ++ ++ L Y PY ++
Sbjct: 221 RE-----YREKWLSEFETKFAFPINFPTGFKIERGFREKLKGWQRLSYTKPYERKNVKCG 275
Query: 314 GTREKEKHACGVVHEILSLTLEKRTLVDHFTHFREEFRFSQQLRGMLIRHPDMFYVSLKG 373
G + EK A V+HE+LSLT+EK VD HFR +F +R +L+RHP +FY+S KG
Sbjct: 276 GVQRYEKRAVAVLHELLSLTVEKMVEVDQLAHFRRDFDIEVNVRELLLRHPGIFYISTKG 335
Query: 374 DRDSVFLREGYRNSQLMEKDRLLLIKEKLRSLVNVPR 410
+ +VFLRE Y L+E + + ++ + LV + R
Sbjct: 336 NAQTVFLREAYEKGGLIEPNPVYEVRRNMLELVLLGR 372
>Medtr8g089370.2 | plant organelle RNA recognition domain protein |
HC | chr8:37138838-37141109 | 20130731
Length = 389
Score = 119 bits (297), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 95/366 (25%), Positives = 165/366 (45%), Gaps = 17/366 (4%)
Query: 49 GRNLSLVSSQRSVCNPPLRIGPIRAAVKRRKEMPFDNVIQRDKKLKFVLRVRKILVSQPD 108
RN + S + + + +K K+ D+V+ + LK + ++ S +
Sbjct: 9 ARNYGFLDSVQQGYIYLQKFSLVNIKLKWVKDRTMDSVVVGKRDLKAAGILVSVIYSSSE 68
Query: 109 RVMSLKELGKYKRELGLDRKRRLIALLRKFPAVF----EIMEEGVFSLKFKMTPEADRLY 164
+ + L +++ +LGL + +L +R++P VF + G F ++ EA +++
Sbjct: 69 DYVPIYRLSRHRGQLGLPDEIKLAVFIRRYPNVFVESYSLDSGGSPVPCFGLSSEAMKIH 128
Query: 165 LEELRVRNEMEDXXXXXXXXXXXXXXEKRILLEKIAHLGADLGLPQDFRETICHSYPQYF 224
EE+ + E + + L+ I L DLGLP D++++ ++P+ F
Sbjct: 129 REEVDILRENSLEFRDRLCKLLMLTRDWMLPLQTIDQLKWDLGLPYDYQDSFVMNHPEKF 188
Query: 225 KVVATERGP----ALELTHWDPXXXXXXXXXXXXXNRIRELEEQNLIIDRTPKFNRVKLP 280
V R P L+L WD + L++Q I V
Sbjct: 189 SFV---RLPDVRVGLKLLFWDDKLAVSEL------EKNASLQQQVEDIKNGTLAFPVSFT 239
Query: 281 KGLNLSKGEMRRIMQFRDLPYISPYADFSMLTSGTREKEKHACGVVHEILSLTLEKRTLV 340
+G + + M + +++ LPY SPYAD S L T EK GV HE+L LTL K+T
Sbjct: 240 RGFGMKRKSMEWLREWQKLPYTSPYADASHLDIRTDVSEKRVVGVFHELLHLTLHKQTER 299
Query: 341 DHFTHFREEFRFSQQLRGMLIRHPDMFYVSLKGDRDSVFLREGYRNSQLMEKDRLLLIKE 400
+ ++ R Q+ RHP +FY+S K D +V LRE Y +L++K L+ I+E
Sbjct: 300 KNVSNLRRPLALPQKFTKAFERHPGIFYISKKNDTQTVVLREAYNGGELVQKHPLVKIRE 359
Query: 401 KLRSLV 406
+L +L+
Sbjct: 360 ELANLL 365
>Medtr8g089370.1 | plant organelle RNA recognition domain protein |
HC | chr8:37138838-37141109 | 20130731
Length = 389
Score = 119 bits (297), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 95/366 (25%), Positives = 165/366 (45%), Gaps = 17/366 (4%)
Query: 49 GRNLSLVSSQRSVCNPPLRIGPIRAAVKRRKEMPFDNVIQRDKKLKFVLRVRKILVSQPD 108
RN + S + + + +K K+ D+V+ + LK + ++ S +
Sbjct: 9 ARNYGFLDSVQQGYIYLQKFSLVNIKLKWVKDRTMDSVVVGKRDLKAAGILVSVIYSSSE 68
Query: 109 RVMSLKELGKYKRELGLDRKRRLIALLRKFPAVF----EIMEEGVFSLKFKMTPEADRLY 164
+ + L +++ +LGL + +L +R++P VF + G F ++ EA +++
Sbjct: 69 DYVPIYRLSRHRGQLGLPDEIKLAVFIRRYPNVFVESYSLDSGGSPVPCFGLSSEAMKIH 128
Query: 165 LEELRVRNEMEDXXXXXXXXXXXXXXEKRILLEKIAHLGADLGLPQDFRETICHSYPQYF 224
EE+ + E + + L+ I L DLGLP D++++ ++P+ F
Sbjct: 129 REEVDILRENSLEFRDRLCKLLMLTRDWMLPLQTIDQLKWDLGLPYDYQDSFVMNHPEKF 188
Query: 225 KVVATERGP----ALELTHWDPXXXXXXXXXXXXXNRIRELEEQNLIIDRTPKFNRVKLP 280
V R P L+L WD + L++Q I V
Sbjct: 189 SFV---RLPDVRVGLKLLFWDDKLAVSEL------EKNASLQQQVEDIKNGTLAFPVSFT 239
Query: 281 KGLNLSKGEMRRIMQFRDLPYISPYADFSMLTSGTREKEKHACGVVHEILSLTLEKRTLV 340
+G + + M + +++ LPY SPYAD S L T EK GV HE+L LTL K+T
Sbjct: 240 RGFGMKRKSMEWLREWQKLPYTSPYADASHLDIRTDVSEKRVVGVFHELLHLTLHKQTER 299
Query: 341 DHFTHFREEFRFSQQLRGMLIRHPDMFYVSLKGDRDSVFLREGYRNSQLMEKDRLLLIKE 400
+ ++ R Q+ RHP +FY+S K D +V LRE Y +L++K L+ I+E
Sbjct: 300 KNVSNLRRPLALPQKFTKAFERHPGIFYISKKNDTQTVVLREAYNGGELVQKHPLVKIRE 359
Query: 401 KLRSLV 406
+L +L+
Sbjct: 360 ELANLL 365
>Medtr3g029990.2 | ubiquitin carboxyl-terminal hydrolase family
protein | HC | chr3:9456270-9464177 | 20130731
Length = 626
Score = 115 bits (288), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 89/333 (26%), Positives = 156/333 (46%), Gaps = 28/333 (8%)
Query: 78 RKEMPFDNVIQRDKKLKFVLRVRKILVSQPDRVMSLKELGKYKRELGLDRKRRLIALLRK 137
+K+ ++ + R+K+ +++ I++ P+ + ++ L K + L D + + + + K
Sbjct: 26 KKDPDLESALSRNKRWIINNQIKNIILRYPNNQIPIQTLQKKFKTL--DLQGKALNWISK 83
Query: 138 FPAVFEIMEEGVFSLKFKMTPEADRLYLEELRVRNEMEDXXXXXXXXXXXXXXEKRILLE 197
+P+ F+ ++ V +T L EE +++ +E + +
Sbjct: 84 YPSCFQFHQDHVL-----LTKRMMELVHEEQSLKDSLESVFVPRLAKLLMLSLNNCLNVM 138
Query: 198 KIAHLGADLGLPQDFRETICHSYPQYFKVVATERG----PALELTHWDPXXXXXXXXXXX 253
KI + LG P D+ I YP F+ + E G +EL W+P
Sbjct: 139 KINEIKNSLGFPDDYLIGIVAKYPDLFR-IRNESGRRSSMVVELMKWNPDFAVSEVEALA 197
Query: 254 XXNRIRELEEQNLIIDRTPKFNRVKLPKGLNLSKGEMRRIMQFRDLPYISPYADFSMLTS 313
N + E N LP S + + +F +PY+SPY+D L
Sbjct: 198 MKNGV----EVNF---------SCCLPSSWVKS---LEKFREFELVPYVSPYSDPRGLVE 241
Query: 314 GTREKEKHACGVVHEILSLTLEKRTLVDHFTHFREEFRFSQQLRGMLIRHPDMFYVSLKG 373
G++E EK G+VHE+LSLTL K+ + HF+ EF ++ +L++HP +FYVS K
Sbjct: 242 GSKEMEKRNVGLVHELLSLTLWKKISIMKLGHFKREFFLPDKVNVLLLKHPGIFYVSNKY 301
Query: 374 DRDSVFLREGYRNSQLMEKDRLLLIKEKLRSLV 406
+V LREGY SQL++KD L+++KEK ++
Sbjct: 302 RIYTVLLREGYVGSQLVDKDPLVVVKEKFGEIM 334
>Medtr3g029990.1 | ubiquitin carboxyl-terminal hydrolase family
protein | HC | chr3:9456270-9462535 | 20130731
Length = 630
Score = 115 bits (288), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 89/333 (26%), Positives = 156/333 (46%), Gaps = 28/333 (8%)
Query: 78 RKEMPFDNVIQRDKKLKFVLRVRKILVSQPDRVMSLKELGKYKRELGLDRKRRLIALLRK 137
+K+ ++ + R+K+ +++ I++ P+ + ++ L K + L D + + + + K
Sbjct: 26 KKDPDLESALSRNKRWIINNQIKNIILRYPNNQIPIQTLQKKFKTL--DLQGKALNWISK 83
Query: 138 FPAVFEIMEEGVFSLKFKMTPEADRLYLEELRVRNEMEDXXXXXXXXXXXXXXEKRILLE 197
+P+ F+ ++ V +T L EE +++ +E + +
Sbjct: 84 YPSCFQFHQDHVL-----LTKRMMELVHEEQSLKDSLESVFVPRLAKLLMLSLNNCLNVM 138
Query: 198 KIAHLGADLGLPQDFRETICHSYPQYFKVVATERG----PALELTHWDPXXXXXXXXXXX 253
KI + LG P D+ I YP F+ + E G +EL W+P
Sbjct: 139 KINEIKNSLGFPDDYLIGIVAKYPDLFR-IRNESGRRSSMVVELMKWNPDFAVSEVEALA 197
Query: 254 XXNRIRELEEQNLIIDRTPKFNRVKLPKGLNLSKGEMRRIMQFRDLPYISPYADFSMLTS 313
N + E N LP S + + +F +PY+SPY+D L
Sbjct: 198 MKNGV----EVNF---------SCCLPSSWVKS---LEKFREFELVPYVSPYSDPRGLVE 241
Query: 314 GTREKEKHACGVVHEILSLTLEKRTLVDHFTHFREEFRFSQQLRGMLIRHPDMFYVSLKG 373
G++E EK G+VHE+LSLTL K+ + HF+ EF ++ +L++HP +FYVS K
Sbjct: 242 GSKEMEKRNVGLVHELLSLTLWKKISIMKLGHFKREFFLPDKVNVLLLKHPGIFYVSNKY 301
Query: 374 DRDSVFLREGYRNSQLMEKDRLLLIKEKLRSLV 406
+V LREGY SQL++KD L+++KEK ++
Sbjct: 302 RIYTVLLREGYVGSQLVDKDPLVVVKEKFGEIM 334
>Medtr1g019170.4 | plant organelle RNA recognition domain protein |
HC | chr1:5720388-5724512 | 20130731
Length = 416
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/286 (28%), Positives = 132/286 (46%), Gaps = 26/286 (9%)
Query: 125 LDRKRRLIALLRKFPAVFEIMEEGVFSLKFKMTPEADRLYLEELRVRNEMEDXXXXXXXX 184
LD + + + + K+P+ F+ ++ V +T L EE +++ +E
Sbjct: 71 LDLQGKALNWISKYPSCFQFHQDHVL-----LTKRMMELVHEEQSLKDSLESVFVPRLAK 125
Query: 185 XXXXXXEKRILLEKIAHLGADLGLPQDFRETICHSYPQYFKVVATERG----PALELTHW 240
+ + KI + LG P D+ I YP F+ + E G +EL W
Sbjct: 126 LLMLSLNNCLNVMKINEIKNSLGFPDDYLIGIVAKYPDLFR-IRNESGRRSSMVVELMKW 184
Query: 241 DPXXXXXXXXXXXXXNRIRELEEQNLIIDRTPKFNRVKLPKGLNLSKGEMRRIMQFRDLP 300
+P N + E N LP S + + +F +P
Sbjct: 185 NPDFAVSEVEALAMKNGV----EVNF---------SCCLPSSWVKS---LEKFHEFELVP 228
Query: 301 YISPYADFSMLTSGTREKEKHACGVVHEILSLTLEKRTLVDHFTHFREEFRFSQQLRGML 360
Y+SPY+D L G++E EK G+VHE+LSLTL K+ + HF+ EF ++ +L
Sbjct: 229 YVSPYSDPRGLVEGSKEMEKRNVGLVHELLSLTLWKKISIMKLGHFKREFFLPDKVNVLL 288
Query: 361 IRHPDMFYVSLKGDRDSVFLREGYRNSQLMEKDRLLLIKEKLRSLV 406
++HP +FYVS K +V LREGY SQL++KD L+++KEK ++
Sbjct: 289 LKHPGIFYVSNKYRIYTVLLREGYVGSQLVDKDPLVVVKEKFGEIM 334
>Medtr1g019170.3 | plant organelle RNA recognition domain protein |
HC | chr1:5720163-5724512 | 20130731
Length = 416
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/286 (28%), Positives = 132/286 (46%), Gaps = 26/286 (9%)
Query: 125 LDRKRRLIALLRKFPAVFEIMEEGVFSLKFKMTPEADRLYLEELRVRNEMEDXXXXXXXX 184
LD + + + + K+P+ F+ ++ V +T L EE +++ +E
Sbjct: 71 LDLQGKALNWISKYPSCFQFHQDHVL-----LTKRMMELVHEEQSLKDSLESVFVPRLAK 125
Query: 185 XXXXXXEKRILLEKIAHLGADLGLPQDFRETICHSYPQYFKVVATERG----PALELTHW 240
+ + KI + LG P D+ I YP F+ + E G +EL W
Sbjct: 126 LLMLSLNNCLNVMKINEIKNSLGFPDDYLIGIVAKYPDLFR-IRNESGRRSSMVVELMKW 184
Query: 241 DPXXXXXXXXXXXXXNRIRELEEQNLIIDRTPKFNRVKLPKGLNLSKGEMRRIMQFRDLP 300
+P N + E N LP S + + +F +P
Sbjct: 185 NPDFAVSEVEALAMKNGV----EVNF---------SCCLPSSWVKS---LEKFHEFELVP 228
Query: 301 YISPYADFSMLTSGTREKEKHACGVVHEILSLTLEKRTLVDHFTHFREEFRFSQQLRGML 360
Y+SPY+D L G++E EK G+VHE+LSLTL K+ + HF+ EF ++ +L
Sbjct: 229 YVSPYSDPRGLVEGSKEMEKRNVGLVHELLSLTLWKKISIMKLGHFKREFFLPDKVNVLL 288
Query: 361 IRHPDMFYVSLKGDRDSVFLREGYRNSQLMEKDRLLLIKEKLRSLV 406
++HP +FYVS K +V LREGY SQL++KD L+++KEK ++
Sbjct: 289 LKHPGIFYVSNKYRIYTVLLREGYVGSQLVDKDPLVVVKEKFGEIM 334
>Medtr1g019170.1 | plant organelle RNA recognition domain protein |
HC | chr1:5720173-5724512 | 20130731
Length = 416
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/286 (28%), Positives = 132/286 (46%), Gaps = 26/286 (9%)
Query: 125 LDRKRRLIALLRKFPAVFEIMEEGVFSLKFKMTPEADRLYLEELRVRNEMEDXXXXXXXX 184
LD + + + + K+P+ F+ ++ V +T L EE +++ +E
Sbjct: 71 LDLQGKALNWISKYPSCFQFHQDHVL-----LTKRMMELVHEEQSLKDSLESVFVPRLAK 125
Query: 185 XXXXXXEKRILLEKIAHLGADLGLPQDFRETICHSYPQYFKVVATERG----PALELTHW 240
+ + KI + LG P D+ I YP F+ + E G +EL W
Sbjct: 126 LLMLSLNNCLNVMKINEIKNSLGFPDDYLIGIVAKYPDLFR-IRNESGRRSSMVVELMKW 184
Query: 241 DPXXXXXXXXXXXXXNRIRELEEQNLIIDRTPKFNRVKLPKGLNLSKGEMRRIMQFRDLP 300
+P N + E N LP S + + +F +P
Sbjct: 185 NPDFAVSEVEALAMKNGV----EVNF---------SCCLPSSWVKS---LEKFHEFELVP 228
Query: 301 YISPYADFSMLTSGTREKEKHACGVVHEILSLTLEKRTLVDHFTHFREEFRFSQQLRGML 360
Y+SPY+D L G++E EK G+VHE+LSLTL K+ + HF+ EF ++ +L
Sbjct: 229 YVSPYSDPRGLVEGSKEMEKRNVGLVHELLSLTLWKKISIMKLGHFKREFFLPDKVNVLL 288
Query: 361 IRHPDMFYVSLKGDRDSVFLREGYRNSQLMEKDRLLLIKEKLRSLV 406
++HP +FYVS K +V LREGY SQL++KD L+++KEK ++
Sbjct: 289 LKHPGIFYVSNKYRIYTVLLREGYVGSQLVDKDPLVVVKEKFGEIM 334
>Medtr1g019170.2 | plant organelle RNA recognition domain protein |
HC | chr1:5720163-5724512 | 20130731
Length = 416
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/286 (28%), Positives = 132/286 (46%), Gaps = 26/286 (9%)
Query: 125 LDRKRRLIALLRKFPAVFEIMEEGVFSLKFKMTPEADRLYLEELRVRNEMEDXXXXXXXX 184
LD + + + + K+P+ F+ ++ V +T L EE +++ +E
Sbjct: 71 LDLQGKALNWISKYPSCFQFHQDHVL-----LTKRMMELVHEEQSLKDSLESVFVPRLAK 125
Query: 185 XXXXXXEKRILLEKIAHLGADLGLPQDFRETICHSYPQYFKVVATERG----PALELTHW 240
+ + KI + LG P D+ I YP F+ + E G +EL W
Sbjct: 126 LLMLSLNNCLNVMKINEIKNSLGFPDDYLIGIVAKYPDLFR-IRNESGRRSSMVVELMKW 184
Query: 241 DPXXXXXXXXXXXXXNRIRELEEQNLIIDRTPKFNRVKLPKGLNLSKGEMRRIMQFRDLP 300
+P N + E N LP S + + +F +P
Sbjct: 185 NPDFAVSEVEALAMKNGV----EVNF---------SCCLPSSWVKS---LEKFHEFELVP 228
Query: 301 YISPYADFSMLTSGTREKEKHACGVVHEILSLTLEKRTLVDHFTHFREEFRFSQQLRGML 360
Y+SPY+D L G++E EK G+VHE+LSLTL K+ + HF+ EF ++ +L
Sbjct: 229 YVSPYSDPRGLVEGSKEMEKRNVGLVHELLSLTLWKKISIMKLGHFKREFFLPDKVNVLL 288
Query: 361 IRHPDMFYVSLKGDRDSVFLREGYRNSQLMEKDRLLLIKEKLRSLV 406
++HP +FYVS K +V LREGY SQL++KD L+++KEK ++
Sbjct: 289 LKHPGIFYVSNKYRIYTVLLREGYVGSQLVDKDPLVVVKEKFGEIM 334
>Medtr3g030020.1 | plant organelle RNA recognition domain protein |
HC | chr3:9470357-9471627 | 20130731
Length = 373
Score = 110 bits (275), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 80/276 (28%), Positives = 127/276 (46%), Gaps = 26/276 (9%)
Query: 135 LRKFPAVFEIMEEGVFSLKFKMTPEADRLYLEELRVRNEMEDXXXXXXXXXXXXXXEKRI 194
+ K+P+ F+ ++ V +T L EE +++ +E +
Sbjct: 38 ISKYPSCFQFHQDHVL-----LTKRMMELVHEEQSLKDSLESVFVPRLAKLLMFSLNNCL 92
Query: 195 LLEKIAHLGADLGLPQDFRETICHSYPQYFKVVATERG----PALELTHWDPXXXXXXXX 250
+ KI + LG P D+ I YP F++ E G +EL W+P
Sbjct: 93 NVMKINEIKNSLGFPDDYLIGIVMKYPDLFRI-RNESGRISSMVVELMKWNPDFSVSEVA 151
Query: 251 XXXXXNRIRELEEQNLIIDRTPKFNRVKLPKGLNLSKGEMRRIMQFRDLPYISPYADFSM 310
N + E N LP S + + +F +PY+SPY+D
Sbjct: 152 ALAMKNGV----EVNF---------SYCLPSSWVKS---LEKFREFELVPYVSPYSDPRG 195
Query: 311 LTSGTREKEKHACGVVHEILSLTLEKRTLVDHFTHFREEFRFSQQLRGMLIRHPDMFYVS 370
L G++E EK G+VHE+LSLTL K+ + HF+ EF ++ +L++HP +FYVS
Sbjct: 196 LVEGSKEMEKRNVGLVHELLSLTLWKKISIMKLGHFKREFFLPDKVNVLLLKHPGIFYVS 255
Query: 371 LKGDRDSVFLREGYRNSQLMEKDRLLLIKEKLRSLV 406
K +V LREGY SQL++KD L+++KEK ++
Sbjct: 256 NKYRIYTVLLREGYVGSQLVDKDPLVVVKEKFGEIM 291
>Medtr4g053720.1 | plant organelle RNA recognition domain protein |
HC | chr4:19386178-19384121 | 20130731
Length = 357
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 91/336 (27%), Positives = 146/336 (43%), Gaps = 29/336 (8%)
Query: 71 IRAAVKRRKEMPFDNVIQRDKKLKFVLRVRKILVSQPDRVMSLKELGKYKRELGLDRKRR 130
+ A VK ++ D + ++K LK V+ ++ +VS P + +SL K L L
Sbjct: 18 VNARVKWVRDDYLDTAVLKEKNLKHVISLKNHIVSSPSKSLSLYNASMLKASLNLPMIT- 76
Query: 131 LIALLRKFPAVF-EIMEEGVFSLKFKMTPEADRLYLEELRVRNE--MEDXXXXXXXXXXX 187
I L+ K+ VF + + K+T +A L+ EE+ V N ++
Sbjct: 77 -IKLVEKYHHVFMQFQPSPGLPPRIKLTAQALALHKEEMEVHNSRTNQEDAAQRLARLLM 135
Query: 188 XXXEKRILLEKIAHLGADLGLPQDFRETICHSYPQYFKVVATE------RGPALELTHWD 241
R+ + I L D+GLP D+ T+ YP YF V E ALEL W
Sbjct: 136 LAGMARLPIYVIEKLKWDMGLPHDYVTTLLAYYPDYFDVCVVEDPLSGKEVLALELVSWR 195
Query: 242 PXXXXXXXXXXXXXNRIRELEEQNLIIDRTPKFNR------VKLPKGLNLSKGEMRRIMQ 295
+ ELE++ + + R + LPK L K +
Sbjct: 196 KEL------------SVSELEKRVMGFNYDADKRRHDIQFPMFLPKSFALEKRVKTWVEG 243
Query: 296 FRDLPYISPYADFSMLTSGTREKEKHACGVVHEILSLTLEKRTLVDHFTHFREEFRFSQQ 355
++ LPYISPY + L S + + EK ++HE+LSL + K+T ++ + E +
Sbjct: 244 WQTLPYISPYENAFHLDSNSDQAEKWTVAILHELLSLLVSKKTESENLICYGECLGLGSR 303
Query: 356 LRGMLIRHPDMFYVSLKGDRDSVFLREGYRNSQLME 391
+ L+ HP +FY+S K + LRE YRN L++
Sbjct: 304 FKKALVHHPGIFYLSNKIRTQTAVLREAYRNEFLVK 339
>Medtr1g098960.1 | plant organelle RNA recognition domain protein |
HC | chr1:44599463-44600719 | 20130731
Length = 418
Score = 105 bits (262), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/282 (28%), Positives = 128/282 (45%), Gaps = 26/282 (9%)
Query: 125 LDRKRRLIALLRKFPAVFEIMEEGVFSLKFKMTPEADRLYLEELRVRNEMEDXXXXXXXX 184
LD + + + + K+P+ F+ ++ V +T +L EE +++ +E
Sbjct: 73 LDLQGKALNWISKYPSCFQFHQDHVL-----LTKRMMKLVHEEQSLKDSLESVFVLRLAK 127
Query: 185 XXXXXXEKRILLEKIAHLGADLGLPQDFRETICHSYPQYFKVVATERG----PALELTHW 240
+ + KI + GLP D+ I Y F+ + E G +EL W
Sbjct: 128 LLMLSLNNCLNVMKINEIKNSFGLPDDYLIGIVAKYSDLFR-IRNESGRRSSMVVELMKW 186
Query: 241 DPXXXXXXXXXXXXXNRIRELEEQNLIIDRTPKFNRVKLPKGLNLSKGEMRRIMQFRDLP 300
+P N + E N LP S + + +F +P
Sbjct: 187 NPDFAVSEVEALAMKNGV----EVNF---------SCCLPSSWVKS---LEKFREFELVP 230
Query: 301 YISPYADFSMLTSGTREKEKHACGVVHEILSLTLEKRTLVDHFTHFREEFRFSQQLRGML 360
Y+SPY+D L G++E EK G+VHE+LSLTL K+ + HF+ EF ++ +L
Sbjct: 231 YVSPYSDPRRLVEGSKEMEKRNLGLVHELLSLTLWKKISIMKLGHFKREFFLPDKVNVLL 290
Query: 361 IRHPDMFYVSLKGDRDSVFLREGYRNSQLMEKDRLLLIKEKL 402
++H +FYVS K +V LREGY SQL++K+ L+ +KEK
Sbjct: 291 LKHHGIFYVSNKYRIYTVLLREGYVGSQLVDKNPLVAVKEKF 332
>Medtr7g107280.1 | plant organelle RNA recognition domain protein |
HC | chr7:43760664-43762324 | 20130731
Length = 420
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 87/334 (26%), Positives = 146/334 (43%), Gaps = 20/334 (5%)
Query: 69 GPIRAAVKRRKEMPFDNVIQRDKKLKFVLRVRKILVSQPDRVMSLKELGKYKRELGLDRK 128
G + +K K D++I ++ LK ++ + ++ K +++ LGL
Sbjct: 24 GIAKVRLKWVKNRSIDHIIDKETDLKAASLLKDAIKRSSTSFLTAKTFSDWQKLLGLTVP 83
Query: 129 RRLIALLRKFPAVF-EIMEEGVFSLK-FKMTPEADRLYLEELRVRNEMEDXXXXXXXXXX 186
++ +R++P +F E SL F++T A L +E + E+
Sbjct: 84 --VLRFIRRYPTLFHEFPHPRWNSLPCFRLTDTAQLLDSQEQSIYAVHENDIVERFSKVL 141
Query: 187 XXXXEKRILLEKIAHLGADLGLPQDFRETICHSYPQYFKVVATERG-PALELTHWDPXXX 245
+ + ++ + L DLGLP F +T+ YP F+ V G A+ L W
Sbjct: 142 MMMKSRTVPIQSLYPLKFDLGLPDAFEKTLIPKYPDKFQFVKAGNGVSAIRLVDW----- 196
Query: 246 XXXXXXXXXXNRIRELEEQNLIIDRTPKFNR--------VKLPKGLNLSKGEMRRIMQFR 297
+ + E +N D+ F R ++ P+G K + +F+
Sbjct: 197 -CDEFAVSALQKSNQCESEN-ASDQYRDFKRGKTALVFPMRFPRGYGGQKKVRFWMDEFQ 254
Query: 298 DLPYISPYADFSMLTSGTREKEKHACGVVHEILSLTLEKRTLVDHFTHFREEFRFSQQLR 357
LPYISPYAD S + + EK GV+HE LSL L K+T ++ REE +
Sbjct: 255 KLPYISPYADSSKIDPKSDLMEKRVVGVLHEFLSLCLHKKTKRNYLRSLREELNLPHKFT 314
Query: 358 GMLIRHPDMFYVSLKGDRDSVFLREGYRNSQLME 391
+ R+P +FY+SLK +V LREGY +L++
Sbjct: 315 RIFTRYPGIFYLSLKCKTTTVTLREGYARGKLVD 348
>Medtr3g063230.1 | plant organelle RNA recognition domain protein |
HC | chr3:28611519-28613057 | 20130731
Length = 425
Score = 102 bits (255), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 86/351 (24%), Positives = 155/351 (44%), Gaps = 9/351 (2%)
Query: 67 RIGPIRAAVKRRKEMPFDNVIQRDKKLKFVLRVRKILVSQP-DRVMSLKELGKYKRELGL 125
+ I+ R ++ F+ ++ + K L V+ V ++++ P +R +S+ L + L L
Sbjct: 42 KTTSIQYVNSRARDPTFEKLMDKYKNLLKVIAVHDLILANPKNRSVSVDFLSNLSQRLHL 101
Query: 126 DRKRRLIALLRKFPAVFEIMEEGVFSLKF-KMTPEADRLYLEELRVRNEMEDXXXXXXXX 184
+R A LRKFP +F I E F ++T A + +E N
Sbjct: 102 NRG--ATAFLRKFPHIFNIYYEPSKLQPFCRLTDAALDVSRQEAEAINTSLPLVVERLVR 159
Query: 185 XXXXXXEKRILLEKIAHLGADLGLPQDFRETICHSYPQYFKVVATERGPALELTHWDPXX 244
K + L + + +LGLP DF E++ + F++ + L
Sbjct: 160 ILSMSASKTVPLRAVFKVWRELGLPDDFEESVIAANSSVFQLCDADEQNTHLLKLVGDVP 219
Query: 245 XXXXXXXXXXXNRIRELEEQNLIIDRTPKFN-RVKLPKGLNLSKGEMRRIMQFRDLPYIS 303
+ ++++ + +++ + + P G+ LSK + +++ LPY+
Sbjct: 220 SSGFRAAVEDWRVVECCKDESSVNSMEMRYSFKQRYPPGMRLSKNFRANVKEWQSLPYMG 279
Query: 304 PYADFS----MLTSGTREKEKHACGVVHEILSLTLEKRTLVDHFTHFREEFRFSQQLRGM 359
PY S +G EK A +VHE +SLT+EK V+ + FR+ F +R +
Sbjct: 280 PYEMVSEKKKTSKAGMMAMEKRAVSIVHEFMSLTVEKMVEVEKISQFRKWFGIDFNIRDL 339
Query: 360 LIRHPDMFYVSLKGDRDSVFLREGYRNSQLMEKDRLLLIKEKLRSLVNVPR 410
+ HP +FY+S KG R +VFLRE Y L+ + + + +L LV + R
Sbjct: 340 FLDHPGIFYLSTKGKRHTVFLREAYERGCLIHPNPVYDARRRLLDLVALER 390
>Medtr7g018630.1 | plant organelle RNA recognition domain protein |
HC | chr7:6083157-6084419 | 20130731
Length = 420
Score = 100 bits (249), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 90/355 (25%), Positives = 159/355 (44%), Gaps = 35/355 (9%)
Query: 67 RIGPIRAAVKRRKEMPFDNV--IQRDKKLKFVLRVRKILVSQPDRVMSLKELGKYKRELG 124
R + +K +K+ +D++ I +LK V+ ++ + P+ + + + K R L
Sbjct: 41 RFNYVNVYMKWKKDSYYDSIEHIHHSIQLKPVIALKNCIAQDPNGCIPISSVSK--RGLQ 98
Query: 125 LDRKRRLIALLRKFPAVFEIMEEGVFSLK-FKMTPEADRLYLEELRVRNEMEDXXXXXXX 183
LD ++ LR++P++FE ++ F++TPEA + +E RV E +
Sbjct: 99 LDVPMKVARFLRQYPSIFEEFTGPKYNHPWFRLTPEAAEIDRDEKRVYEESREELRSRLK 158
Query: 184 XXXXXXXEKRILLEKIAHLGADLGLPQDFRETICHSYPQYFKVVATE---RGPALELTHW 240
E + L+ I + LGLP DF + + F+ V E +G A+E
Sbjct: 159 KMILMTKENVLPLKIIQGMQWYLGLPHDFLQHHEQNLDDSFRFVEMEDGLKGLAIE---- 214
Query: 241 DPXXXXXXXXXXXXXNRIRELEEQN-----LIIDRTPKFNRVKLP----KGLNLSKGEMR 291
R+ + E+N + D + + ++ P K L +
Sbjct: 215 -------------SRERVYSVMEENAMKKGMYYDGS-QTEAIEFPFFPSKALRMKTKIEN 260
Query: 292 RIMQFRDLPYISPYADFSMLTSGTREKEKHACGVVHEILSLTLEKRTLVDHFTHFREEFR 351
+ +F+ LPYISPY DFS L + EK GV+HE+LSL ++ ++ F
Sbjct: 261 WLHEFQKLPYISPYDDFSNLDPNSDIAEKRLIGVLHELLSLFIDHSAERRKLLCLKKYFG 320
Query: 352 FSQQLRGMLIRHPDMFYVSLKGDRDSVFLREGYRNSQLMEKDRLLLIKEKLRSLV 406
F Q++ RHP MFY+S++ +V L+E Y N +E LL ++++ L+
Sbjct: 321 FPQKVHRAFERHPHMFYMSMRNKTCTVILKEAYCNELAIENHPLLSVRKRYIKLM 375
>Medtr2g067960.1 | plant organelle RNA recognition domain protein |
HC | chr2:28431693-28434356 | 20130731
Length = 431
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 86/324 (26%), Positives = 148/324 (45%), Gaps = 25/324 (7%)
Query: 98 RVRKILVSQPDRVMSLKELGKYKRELGLDRKRRLIALLRKFPAVFEIMEEGVFSLKFKMT 157
++ ++++S+ ++ + + L +G R A + KFP VFEI E V + F
Sbjct: 34 QISELILSELNQSIPIPRLETLAHRIGFTR-HEASAFILKFPYVFEIFEHLVQRILFCRL 92
Query: 158 PEADRLYLEELRVR-NEMEDXXXXXXXXXXXXXXEKRILLEKIAHLGADLGLPQDFRETI 216
L +E+ R+ + R+ LE + + LGL DF +
Sbjct: 93 TRKTILQIEQERLALADQVGRTVTCLRKMIMMSNGLRLRLEHVRIARSALGLRDDFEYLV 152
Query: 217 CHSYPQYFKVVATE--RGPALELTHWDPXXXX-XXXXXXXXXNRIRELEEQNL----IID 269
YP++F++V + R +EL +DP R R E +++ +ID
Sbjct: 153 VLRYPEFFRLVDAKETRNKYIELVEFDPKLATCAIEDARERVYRERGSEAEDIRFSFLID 212
Query: 270 RTPKFNRVKLPKGLNLSKGEMRRIMQFRDLPYISPYADFSMLT----SGTREKEKHACGV 325
P F K+ K ++ + +++ LPY SPY D + EK A
Sbjct: 213 FLPGF---KISKYFRIA------MWKWQSLPYWSPYEDVWGYDLRSPEAQKRMEKRAVAT 263
Query: 326 VHEILSLTLEKRTLVDHFTHFREEFRFSQQLRGMLIRHPDMFYVSLKGDRD---SVFLRE 382
+HE+LSLT+EK+ ++ HF+ ++L+ L++H +FYVS +G+ +VFLRE
Sbjct: 264 IHELLSLTVEKKITLERIAHFQMAMNLPKKLKEFLLQHQGIFYVSTRGNHGKLHTVFLRE 323
Query: 383 GYRNSQLMEKDRLLLIKEKLRSLV 406
YR +L+E + L L + KL +V
Sbjct: 324 AYRKGELVEPNDLYLARRKLAEVV 347
>Medtr6g043850.1 | plant organelle RNA recognition domain protein |
LC | chr6:15115306-15109090 | 20130731
Length = 664
Score = 97.1 bits (240), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 83/334 (24%), Positives = 152/334 (45%), Gaps = 16/334 (4%)
Query: 79 KEMPFDNVIQRDKKLKFVLRVRKILVSQPDRVMSLKELGKYKRELGLDRKRRLIALLRKF 138
++ D+ ++R+K LK +L + ++ ++P + + + + K R L L R I +RK+
Sbjct: 32 RDRGLDHAVEREKNLKPLLTLLSLINNEPTKSLPISII-KQSRSLNL--PFRPIEFIRKY 88
Query: 139 PAVFE-IMEEG-VFSLKFKMTPEADRLYLEE--LRVRNEMEDXXXXXXXXXXXXXXEKRI 194
P+VFE G F K+T +A L +E L + + +I
Sbjct: 89 PSVFEEFYNNGCTFEPHVKLTAKAIDLNADEKFLVASDVFKKDVAVRVLKLLMIAKGNKI 148
Query: 195 LLEKIAHLGADLGLPQDFRETICHSYPQYFKVVATERGPALELTHWDPXXXXXXXXXXXX 254
L + L DLGLP D+ +++ +P +F+VV + LEL W
Sbjct: 149 PLSVVDGLKWDLGLPDDYVKSVIPEFPDHFRVVGVDNNAVLELVCWSKKHSVSFLEKKYG 208
Query: 255 XNRIRELEEQNLIIDRTPKFNRVKLPKGLNLSKGEMRRIMQFRDLPYISPYADFSMLTSG 314
+ +E V+ G + K + + ++ L Y+SPY + L+
Sbjct: 209 DKAKGQGKELGFP---------VQFSTGFEMDKKYEKWVKEWNGLRYVSPYENGVNLSGS 259
Query: 315 TREKEKHACGVVHEILSLTLEKRTLVDHFTHFREEFRFSQQLRGMLIRHPDMFYVSLKGD 374
+ E +K GV+HEIL+L + K+T D+ E + + + ++++HP +FYVS K
Sbjct: 260 SEESDKWVVGVLHEILNLLVSKKTEKDNVLMIGEWLGLASRFKRVILQHPGIFYVSSKNR 319
Query: 375 RDSVFLREGYRNSQLMEKDRLLLIKEKLRSLVNV 408
+V LR+GY+ L+E + + + + L+N
Sbjct: 320 MYTVVLRDGYKRGLLVEDNPAMEFRRRYIHLMNT 353
>Medtr3g063230.2 | plant organelle RNA recognition domain protein |
HC | chr3:28611460-28613057 | 20130731
Length = 401
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 73/137 (53%), Gaps = 4/137 (2%)
Query: 278 KLPKGLNLSKGEMRRIMQFRDLPYISPYADFS----MLTSGTREKEKHACGVVHEILSLT 333
+ P G+ LSK + +++ LPY+ PY S +G EK A +VHE +SLT
Sbjct: 230 RYPPGMRLSKNFRANVKEWQSLPYMGPYEMVSEKKKTSKAGMMAMEKRAVSIVHEFMSLT 289
Query: 334 LEKRTLVDHFTHFREEFRFSQQLRGMLIRHPDMFYVSLKGDRDSVFLREGYRNSQLMEKD 393
+EK V+ + FR+ F +R + + HP +FY+S KG R +VFLRE Y L+ +
Sbjct: 290 VEKMVEVEKISQFRKWFGIDFNIRDLFLDHPGIFYLSTKGKRHTVFLREAYERGCLIHPN 349
Query: 394 RLLLIKEKLRSLVNVPR 410
+ + +L LV + R
Sbjct: 350 PVYDARRRLLDLVALER 366
>Medtr3g448960.1 | plant organelle RNA recognition domain protein |
HC | chr3:16485012-16487013 | 20130731
Length = 463
Score = 76.3 bits (186), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 113/285 (39%), Gaps = 49/285 (17%)
Query: 125 LDRKRRLIALLRKFPAVFEIMEEGVFSLKFKMTPEADRLYLEELRVRNEMEDXXXXXXXX 184
LD + + + + K+P+ F+ ++ V +T +L EE +++ +E
Sbjct: 73 LDLQGKALNWISKYPSCFQFHQDHVL-----LTKRMMKLVHEEQSLKDSLESVFVLRLAK 127
Query: 185 XXXXXXEKRILLEKIAHLGADLGLPQDFRETICHSYPQYFKV---VATERGPALELTHWD 241
+ + KI + GLP D+ I Y F++ +EL W+
Sbjct: 128 LLMLSLNNCLNVMKINEIKNSFGLPDDYLIGIVAKYSDLFRIRNESGRRSSMVVELMKWN 187
Query: 242 PXXXXXXXXXXXXXNRIRELEEQNLIIDRTPKFNRVKLPKGLNLSKGEMRRIMQFRDLPY 301
P N + E N LP S + + +F +PY
Sbjct: 188 PDFAVSEVEALAMKNGV----EVNF---------SCCLPSSWVKS---LEKFREFELVPY 231
Query: 302 ISPYADFSMLTSGTREKEKHACGVVHEILSLTLEKRTLVDHFTHFREEFRFSQQLRGMLI 361
+SPY+D L G++E EK G+VHE+LSLTL K+ + HF++ F
Sbjct: 232 VSPYSDPRRLVEGSKEMEKRNLGLVHELLSLTLWKKISIMKLGHFKKGVFF--------- 282
Query: 362 RHPDMFYVSLKGDRDSVFLREGYRNSQLMEKDRLLLIKEKLRSLV 406
+REGY SQL++K+ L+ +KEK ++
Sbjct: 283 ----------------CLIREGYVGSQLVDKNPLVAVKEKFGKIM 311
>Medtr8g102038.1 | plant organelle RNA recognition domain protein |
HC | chr8:42900320-42901238 | 20130731
Length = 238
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 79/198 (39%), Gaps = 26/198 (13%)
Query: 153 KFKMTPEADRLYLEELRVRNEMEDXXXXXXXXXXXXXXE--KRILLEKIAHLGADLGLPQ 210
+ K+T +A L+ EE+ V N + R + I L D+GLP
Sbjct: 53 RVKLTAQALALHKEEMEVHNSRTNREDAAQRLSRLLMLAGMARFPIYVIEKLKWDMGLPH 112
Query: 211 DFRETICHSYPQYFKVVATE------RGPALELTHWDPXXXXXXXXXXXXXNRIRELEEQ 264
D+ T+ YP YF V E ALE W + ELE++
Sbjct: 113 DYVTTLLAHYPDYFDVCVVEDPLSGKEVLALEFVLWRKELS------------VSELEKR 160
Query: 265 NLIIDRTPKFNRVK------LPKGLNLSKGEMRRIMQFRDLPYISPYADFSMLTSGTREK 318
+ + R LPK L K + ++ LPYISPY + L S + +
Sbjct: 161 VMGFNYGADNRRYDIQFPMFLPKSFALEKRVKTWVEGWQTLPYISPYENAFHLDSNSDQA 220
Query: 319 EKHACGVVHEILSLTLEK 336
EK + ++HE+LSL + K
Sbjct: 221 EKWSVAILHELLSLLVSK 238