Miyakogusa Predicted Gene
- Lj0g3v0266529.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0266529.1 tr|A9TF63|A9TF63_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_169729,43.81,3e-17,COX16,Cytochrome c oxidase assembly
protein COX16; Q4P1Z3_USTMA_Q4P1Z3;,Cytochrome c oxidase
assembl,CUFF.17577.1
(116 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr1g094840.1 | cytochrome C oxidase assembly protein COX16 | ... 123 4e-29
Medtr1g094845.1 | transmembrane protein, putative | HC | chr1:42... 48 2e-06
>Medtr1g094840.1 | cytochrome C oxidase assembly protein COX16 | HC
| chr1:42657311-42657011 | 20130731
Length = 74
Score = 123 bits (308), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 59/72 (81%), Positives = 66/72 (91%)
Query: 44 HLLQGSKDIAKVKDDQEWEIIEARKALSRTGPVDAYQPKKISLEDELKVLQQKVDINDYE 103
HL SKDI++VKDD+EWEIIEARKALSRTGPV+AY+PKKISL+DELK LQQKVDINDYE
Sbjct: 2 HLCLPSKDISRVKDDKEWEIIEARKALSRTGPVNAYKPKKISLDDELKALQQKVDINDYE 61
Query: 104 YKKIPKPNESHR 115
+KKIPKPNE R
Sbjct: 62 FKKIPKPNEDRR 73
>Medtr1g094845.1 | transmembrane protein, putative | HC |
chr1:42659912-42658654 | 20130731
Length = 77
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 27/32 (84%), Gaps = 3/32 (9%)
Query: 2 TSTVHQSQNPATSFKRWGRKSPFVRYGLPMIS 33
+STV ++ A++FKRWGRK PF+RYGLPMIS
Sbjct: 12 SSTVEKT---ASTFKRWGRKGPFLRYGLPMIS 40