Miyakogusa Predicted Gene

Lj0g3v0266429.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0266429.1 tr|I6LNS9|I6LNS9_HEVBR Mitochondrial 50S
ribosomal protein L21 OS=Hevea brasiliensis GN=mRPL21 PE=2
,52.17,0.000000000000009,seg,NULL,gene.g20678.t1.1
         (67 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g058400.1 | 50S ribosomal protein L21, related protein | H...    66   6e-12
Medtr7g111750.1 | 50S ribosomal protein L21, related protein | H...    63   6e-11
Medtr7g111750.3 | 50S ribosomal protein L21, related protein | H...    62   1e-10
Medtr7g111750.2 | 50S ribosomal protein L21, related protein | H...    62   1e-10

>Medtr2g058400.1 | 50S ribosomal protein L21, related protein | HC |
           chr2:24132316-24136266 | 20130731
          Length = 368

 Score = 66.2 bits (160), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 38/77 (49%), Positives = 44/77 (57%), Gaps = 25/77 (32%)

Query: 1   MLLGSATQTIICRPTVPDAAVHAVVEEH-------------------------ELTKLRI 35
           +LLGS +QTI+ RP VPD AVHAVVEEH                         ELTKLRI
Sbjct: 277 LLLGSPSQTIVGRPIVPDGAVHAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRI 336

Query: 36  TDIQGIEKPPIVLDEKP 52
           T+I+G+EKP   L EKP
Sbjct: 337 TNIEGVEKPLNELVEKP 353


>Medtr7g111750.1 | 50S ribosomal protein L21, related protein | HC |
           chr7:45898944-45894633 | 20130731
          Length = 300

 Score = 62.8 bits (151), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 38/77 (49%), Positives = 44/77 (57%), Gaps = 25/77 (32%)

Query: 1   MLLGSATQTIICRPTVPDAAVHAVVEEH-------------------------ELTKLRI 35
           +LLGS +QTI+ RP VPD AVHAVVEEH                         ELTKLRI
Sbjct: 209 LLLGSPSQTIVGRPIVPDGAVHAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRI 268

Query: 36  TDIQGIEKPPIVLDEKP 52
           T+I+G+EKP   L EKP
Sbjct: 269 TNIEGVEKPLNELVEKP 285


>Medtr7g111750.3 | 50S ribosomal protein L21, related protein | HC |
           chr7:45898598-45895061 | 20130731
          Length = 290

 Score = 62.0 bits (149), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/77 (49%), Positives = 44/77 (57%), Gaps = 25/77 (32%)

Query: 1   MLLGSATQTIICRPTVPDAAVHAVVEEH-------------------------ELTKLRI 35
           +LLGS +QTI+ RP VPD AVHAVVEEH                         ELTKLRI
Sbjct: 199 LLLGSPSQTIVGRPIVPDGAVHAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRI 258

Query: 36  TDIQGIEKPPIVLDEKP 52
           T+I+G+EKP   L EKP
Sbjct: 259 TNIEGVEKPLNELVEKP 275


>Medtr7g111750.2 | 50S ribosomal protein L21, related protein | HC |
           chr7:45898965-45894633 | 20130731
          Length = 290

 Score = 62.0 bits (149), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/77 (49%), Positives = 44/77 (57%), Gaps = 25/77 (32%)

Query: 1   MLLGSATQTIICRPTVPDAAVHAVVEEH-------------------------ELTKLRI 35
           +LLGS +QTI+ RP VPD AVHAVVEEH                         ELTKLRI
Sbjct: 199 LLLGSPSQTIVGRPIVPDGAVHAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRI 258

Query: 36  TDIQGIEKPPIVLDEKP 52
           T+I+G+EKP   L EKP
Sbjct: 259 TNIEGVEKPLNELVEKP 275