Miyakogusa Predicted Gene
- Lj0g3v0266349.4
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0266349.4 Non Characterized Hit- tr|F6HWY1|F6HWY1_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,59.52,2e-19,alpha/beta knot,NULL; SUBFAMILY NOT NAMED,NULL; RNA
METHYLTRANSFERASE,NULL; SpoU_methylase,tRNA/rRNA,CUFF.17563.4
(107 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr8g068220.1 | tRNA/rRNA methyltransferase SpoU family protei... 171 1e-43
>Medtr8g068220.1 | tRNA/rRNA methyltransferase SpoU family protein |
HC | chr8:28444174-28448330 | 20130731
Length = 330
Score = 171 bits (433), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 83/99 (83%), Positives = 87/99 (87%)
Query: 1 MDYLIIPDKAEIPNGLVTSTASIVHVSSIVMRKLSGLQSTDSVDAIALIKIPDSVFNLDG 60
MD LI+PDKAEIPNGL S SIVHVSS VMRK+SGLQSTDS+DAIAL+KIP S NLD
Sbjct: 102 MDCLILPDKAEIPNGLDESADSIVHVSSTVMRKISGLQSTDSIDAIALMKIPASFSNLDD 161
Query: 61 DQNNCYKWFPSAHRILVLDGIQDPGNLGTLLRSAVAFRW 99
DQ NC KWFPSAHRILVLDGIQDPGNLGTLLRSAVAFRW
Sbjct: 162 DQKNCQKWFPSAHRILVLDGIQDPGNLGTLLRSAVAFRW 200