Miyakogusa Predicted Gene

Lj0g3v0266349.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0266349.3 Non Characterized Hit- tr|D8UGY1|D8UGY1_VOLCA
Putative uncharacterized protein OS=Volvox carteri
GN=,48.94,0.0003,alpha/beta knot,NULL; SUBFAMILY NOT NAMED,NULL; RNA
METHYLTRANSFERASE,NULL; seg,NULL; SpoU_methylase,CUFF.17563.3
         (187 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g068220.1 | tRNA/rRNA methyltransferase SpoU family protei...   286   1e-77

>Medtr8g068220.1 | tRNA/rRNA methyltransferase SpoU family protein |
           HC | chr8:28444174-28448330 | 20130731
          Length = 330

 Score =  286 bits (731), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 139/173 (80%), Positives = 145/173 (83%)

Query: 15  NLDGDQNNCYKWFPSAHRILVLDGIQDPGNLGTLLRSAVAFRWDGVFLLPGCCDPFNEKA 74
           NLD DQ NC KWFPSAHRILVLDGIQDPGNLGTLLRSAVAFRWDGVFLLPGCCDPFNEKA
Sbjct: 158 NLDDDQKNCQKWFPSAHRILVLDGIQDPGNLGTLLRSAVAFRWDGVFLLPGCCDPFNEKA 217

Query: 75  LRASRGASFQLPVVSGNWNHLESLKETFQMKLLAGHPEHEGLDKRVCLLSPSFCDSLSDT 134
           LRASRGASFQLP+VSG+WNHLESLKE  QMKLLAGHP+HEGL K V  LS SFCDS+ DT
Sbjct: 218 LRASRGASFQLPIVSGSWNHLESLKEESQMKLLAGHPQHEGLIKPVFSLSQSFCDSILDT 277

Query: 135 PLCXXXXXXXXXXXXXXXHACELVSIAMAGEYESLNVSVAGGIFLYMLQPENR 187
           PLC                ACELVSIAM GEYESLNVSVAGGIFLYMLQP+N+
Sbjct: 278 PLCLVLGSEGSGLSEKSLQACELVSIAMTGEYESLNVSVAGGIFLYMLQPKNK 330