Miyakogusa Predicted Gene

Lj0g3v0266149.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0266149.1 Non Characterized Hit- tr|B8A712|B8A712_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,54.39,2e-19,Ubiquitin homologues,Ubiquitin; Ubiquitin-like,NULL;
PREDICTED: SIMILAR TO UBIQUITIN,NULL; UBIQUITIN,CUFF.17547.1
         (135 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g088640.1 | ubiquitin-like domain CTD phosphatase | HC | c...   164   2e-41

>Medtr8g088640.1 | ubiquitin-like domain CTD phosphatase | HC |
           chr8:36805772-36808866 | 20130731
          Length = 335

 Score =  164 bits (416), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 91/127 (71%), Positives = 101/127 (79%), Gaps = 11/127 (8%)

Query: 17  CRTQASNLREEEMPLKVKWSGKDYTVRVCGDDTIVELKRRICELTNVLPIRQKFLYPKLG 76
           C + +S+  EEE+ LKVKWSGKDYTVRVC DDT+ ELKRRICE TNVLPIRQK LYPKL 
Sbjct: 4   CSSSSSSSSEEEITLKVKWSGKDYTVRVCADDTVGELKRRICESTNVLPIRQKLLYPKLA 63

Query: 77  SKLNDHS---------LNSLSIPKFTMIGTNEEDFLIVDPVEAPEIIDDLELPQEEAIDI 127
           SKLND S         LN+ S+ KFTMIGT EED LIVDPV+ PEI+DD ELPQEEAIDI
Sbjct: 64  SKLNDDSLLLSQLPINLNNFSL-KFTMIGTTEED-LIVDPVDTPEILDDFELPQEEAIDI 121

Query: 128 KDMEVNK 134
           KDM+VNK
Sbjct: 122 KDMQVNK 128