Miyakogusa Predicted Gene

Lj0g3v0265589.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0265589.3 Non Characterized Hit- tr|F6GUK3|F6GUK3_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,74.68,2e-19,RRM_1,RNA recognition motif domain; no
description,Nucleotide-binding, alpha-beta plait;
SERINE/ARGI,CUFF.17519.3
         (77 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g054675.1 | RNA recognition motif, a.k.a. RRM, RBD protein...    73   7e-14
Medtr3g083550.1 | RNA recognition motif, a.k.a. RRM, RBD protein...    71   2e-13
Medtr4g118630.1 | RNA recognition motif, a.k.a. RRM, RBD protein...    65   1e-11
Medtr5g079870.1 | RNA recognition motif, a.k.a. RRM, RBD protein...    56   8e-09
Medtr5g079870.3 | RNA recognition motif, a.k.a. RRM, RBD protein...    56   9e-09

>Medtr1g054675.1 | RNA recognition motif, a.k.a. RRM, RBD protein
          | HC | chr1:23814162-23811233 | 20130731
          Length = 220

 Score = 72.8 bits (177), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 33/41 (80%), Positives = 35/41 (85%)

Query: 37 LPTSLLVRNLHRDTRTEDLHGPFSHFGPIKDVYLPRDYYTG 77
          LPTSLLVRNL +D R EDLH PF  FGP+KDVYLPRDYYTG
Sbjct: 41 LPTSLLVRNLAKDCRPEDLHDPFGQFGPVKDVYLPRDYYTG 81


>Medtr3g083550.1 | RNA recognition motif, a.k.a. RRM, RBD protein
          | HC | chr3:37716900-37714302 | 20130731
          Length = 248

 Score = 71.2 bits (173), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 32/44 (72%), Positives = 36/44 (81%)

Query: 34 ERDLPTSLLVRNLHRDTRTEDLHGPFSHFGPIKDVYLPRDYYTG 77
          + DLPTSLLVRNL  D R EDL  PF HFGP+KD+YLP+DYYTG
Sbjct: 36 QSDLPTSLLVRNLRHDCRPEDLRRPFGHFGPLKDIYLPKDYYTG 79


>Medtr4g118630.1 | RNA recognition motif, a.k.a. RRM, RBD protein
          | HC | chr4:49138254-49142925 | 20130731
          Length = 314

 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 29/41 (70%), Positives = 33/41 (80%)

Query: 37 LPTSLLVRNLHRDTRTEDLHGPFSHFGPIKDVYLPRDYYTG 77
          LP+ LLVRNL  D R EDL GPF  +GP+KDVYLPR+YYTG
Sbjct: 46 LPSGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPRNYYTG 86


>Medtr5g079870.1 | RNA recognition motif, a.k.a. RRM, RBD protein
          | HC | chr5:34159814-34164480 | 20130731
          Length = 286

 Score = 55.8 bits (133), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 23/38 (60%), Positives = 30/38 (78%)

Query: 40 SLLVRNLHRDTRTEDLHGPFSHFGPIKDVYLPRDYYTG 77
          SLLVRN+  D R E+L  PF  FGP++DVY+P+DYY+G
Sbjct: 48 SLLVRNIPLDCRPEELRAPFERFGPVRDVYIPKDYYSG 85


>Medtr5g079870.3 | RNA recognition motif, a.k.a. RRM, RBD protein
          | HC | chr5:34159851-34164480 | 20130731
          Length = 249

 Score = 55.8 bits (133), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 23/38 (60%), Positives = 30/38 (78%)

Query: 40 SLLVRNLHRDTRTEDLHGPFSHFGPIKDVYLPRDYYTG 77
          SLLVRN+  D R E+L  PF  FGP++DVY+P+DYY+G
Sbjct: 48 SLLVRNIPLDCRPEELRAPFERFGPVRDVYIPKDYYSG 85