Miyakogusa Predicted Gene

Lj0g3v0265109.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0265109.1 tr|G7IKW7|G7IKW7_MEDTR SNW domain-containing
protein OS=Medicago truncatula GN=MTR_2g030450 PE=4
SV=,85.93,0,seg,NULL; SKIP_SNW,SKI-interacting protein SKIP, SNW
domain; NUCLEAR PROTEIN SKIP-RELATED,SKI-intera,CUFF.17517.1
         (523 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g030450.1 | GAMYB-binding protein | HC | chr2:11456477-114...   740   0.0  
Medtr2g005905.1 | hypothetical protein | LC | chr2:394617-396351...   144   1e-34
Medtr7g109770.1 | hypothetical protein | LC | chr7:44945332-4494...    82   1e-15

>Medtr2g030450.1 | GAMYB-binding protein | HC |
           chr2:11456477-11453867 | 20130731
          Length = 613

 Score =  740 bits (1911), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/533 (73%), Positives = 413/533 (77%), Gaps = 13/533 (2%)

Query: 1   MGRDKSSKTGSKILPVTVDAHGNVAYDAIVKQNENAKKIVYTQQKDLIPKILKNXXXXXX 60
           MGR+K+SK GSKILPVTVDAHGNVAYDAIVKQNENAKKIVYTQ KDLIPKILKN      
Sbjct: 82  MGRNKNSKPGSKILPVTVDAHGNVAYDAIVKQNENAKKIVYTQHKDLIPKILKNDGDDEM 141

Query: 61  XXXXX--VQKEIEETMQETKAALEKIVNVRLSAAQPKNVAKQSSDSKYIKYKPSQQSAAF 118
                   Q+EI+ETM+ETKAALEKIVNVRLSAAQPKNV K +SDSKYIKYKPSQQ+AAF
Sbjct: 142 EDGEDEDAQREIDETMEETKAALEKIVNVRLSAAQPKNVPKHNSDSKYIKYKPSQQNAAF 201

Query: 119 NSGAKERVIRMVEMPVDPLEPPKFKHKRVPKAXXXXXXXXXXXXXXXXTVKDQQDWKIPP 178
           NSGA+ERVIRMVEMPVDPLEPPKFKHKRVPKA                TVKDQQDWKIPP
Sbjct: 202 NSGARERVIRMVEMPVDPLEPPKFKHKRVPKASGSPPVPVMHSPPRPVTVKDQQDWKIPP 261

Query: 179 CISNWKNPKGYTIPLDKRLAADGRGLQEVQINDNFAKLSESLYVAEQKAREAVAMRSKVX 238
           CISNWKNPKGYTIPLDKRLAADGRGLQEVQINDNFAKLSE+LYVAEQKAREAVAMRSKV 
Sbjct: 262 CISNWKNPKGYTIPLDKRLAADGRGLQEVQINDNFAKLSEALYVAEQKAREAVAMRSKVQ 321

Query: 239 XXXXXXXXXXXXXXXXXXAQKARSERTGXXXXXXXXXXXXXXXXXXXXDADMRGDYEHPR 298
                             AQKARSER G                    D DMR DY+H  
Sbjct: 322 KEMLLKEKERKEQELRALAQKARSERIGVAPPAAAVPVVSEKSGVD--DGDMRVDYDHRG 379

Query: 299 ERE---------KNFPKESREEREDXXXXXXXXXXXXXXXXXXXXXXAKDAAMGKKSKIT 349
           +R          KN+PKESREE+E+                      AKDAAMGKKSKIT
Sbjct: 380 DRGDRDREREREKNYPKESREEKEERLGREKIRMERRKEREKERRIEAKDAAMGKKSKIT 439

Query: 350 RDRDRDISEKVALGMATAKTGTEVMYDERLFNQDQGMSSGFATDDQYNVYDKGLFTAQPT 409
           RDRDRDISEKVALGMA+ K GTEVMYDERLFNQD+GMSSGFATDDQYNVYDKGLF AQPT
Sbjct: 440 RDRDRDISEKVALGMASTKQGTEVMYDERLFNQDKGMSSGFATDDQYNVYDKGLFNAQPT 499

Query: 410 LSTLYRPKKDVDNETYGGADEQLEKIMKTDRFKPDKAFSGASERAGPRDRPVEFENEEAD 469
           LSTLYRPKKDVDNE YGGADEQLEKIMKTDRFKPDK+F+G SERA PRDRPVEFE+EEAD
Sbjct: 500 LSTLYRPKKDVDNEAYGGADEQLEKIMKTDRFKPDKSFTGTSERAPPRDRPVEFESEEAD 559

Query: 470 PFGLDQFLTEVKKGKKAMEKVGGGGTMKASAGSSMRDGYEGGSSRTRIGFERG 522
           PFGLDQFLTEVKKGKKAME VGGGGTM+ASAGSSMRD  +GGS RTRIGFERG
Sbjct: 560 PFGLDQFLTEVKKGKKAMENVGGGGTMRASAGSSMRDSSDGGSGRTRIGFERG 612


>Medtr2g005905.1 | hypothetical protein | LC | chr2:394617-396351 |
           20130731
          Length = 397

 Score =  144 bits (364), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 82/149 (55%), Positives = 90/149 (60%), Gaps = 48/149 (32%)

Query: 337 AKDAAMGKKSKITRDRDRDISEKVALGMATAKTGTEVMYDERLFNQDQGMSSGFATDDQY 396
           AKD  MGKK KITRD+DRDISEKVALGM+  K GT+VM+DE+L NQD             
Sbjct: 73  AKDVGMGKKCKITRDKDRDISEKVALGMSYTKQGTQVMHDEKLLNQD------------- 119

Query: 397 NVYDKGLFTAQPTLSTLYRPKKDVDNETYGGADEQLEKIMKTDRFKPDKAFSGASERA-- 454
                                    NE YGGADEQLEK         DK F+GASERA  
Sbjct: 120 -------------------------NEAYGGADEQLEKT--------DKGFTGASERAPL 146

Query: 455 GPRDRPVEFENEEADPFGLDQFLTEVKKG 483
            PRDRPVEFE++EADPFGLDQFLTEVKKG
Sbjct: 147 TPRDRPVEFESDEADPFGLDQFLTEVKKG 175


>Medtr7g109770.1 | hypothetical protein | LC |
           chr7:44945332-44946260 | 20130731
          Length = 289

 Score = 82.4 bits (202), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/84 (53%), Positives = 53/84 (63%), Gaps = 26/84 (30%)

Query: 337 AKDAAMGKKSKITRDRDRDISEKVALGMATAKTGTEVMYDERLFNQDQGMSSGFATDDQY 396
           A+DAAMGKKS+ITRDRDRDISEK+ LG A+ K GTEV+YDERLFN+D+            
Sbjct: 212 AEDAAMGKKSRITRDRDRDISEKLDLGYASPKHGTEVLYDERLFNEDK------------ 259

Query: 397 NVYDKGLFTAQPTLSTLYRPKKDV 420
                         STL+ PKKDV
Sbjct: 260 --------------STLFTPKKDV 269