Miyakogusa Predicted Gene

Lj0g3v0264999.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0264999.1 tr|B9HZK5|B9HZK5_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_771071 PE=4
SV=1,34.64,0.0000000002,FBD,FBD; domain in FBox and BRCT domain
containing pl,FBD,CUFF.17463.1
         (169 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g080590.1 | F-box/RNI/FBD-like domain protein | HC | chr4:...    61   6e-10
Medtr5g005690.1 | F-box/RNI superfamily protein, putative | LC |...    59   2e-09
Medtr3g107160.1 | F-box/RNI/FBD-like domain protein | LC | chr3:...    54   7e-08
Medtr7g023330.1 | F-box/RNI/FBD-like domain protein | LC | chr7:...    53   1e-07
Medtr4g080773.4 | F-box/RNI/FBD-like domain protein | LC | chr4:...    50   1e-06
Medtr4g080773.2 | F-box/RNI/FBD-like domain protein | LC | chr4:...    50   1e-06
Medtr4g080773.3 | F-box/RNI/FBD-like domain protein | LC | chr4:...    50   1e-06
Medtr4g080773.1 | F-box/RNI/FBD-like domain protein | LC | chr4:...    50   1e-06
Medtr3g107120.1 | F-box/RNI/FBD-like domain protein | LC | chr3:...    50   1e-06
Medtr7g032380.1 | cyclin-like F-box protein | LC | chr7:11377322...    49   3e-06
Medtr1089s0010.1 | cyclin-like F-box protein | LC | scaffold1089...    48   4e-06

>Medtr4g080590.1 | F-box/RNI/FBD-like domain protein | HC |
           chr4:31220054-31216957 | 20130731
          Length = 456

 Score = 60.8 bits (146), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 60/126 (47%), Gaps = 12/126 (9%)

Query: 18  AFEGLTYSKELYACFPVLYKLECLAFLPTGKAI--------NFGCGTMTNFLEKLPCLEL 69
           + E L  S +   C    Y    L  LP+ K +        +  C  + + L K P LE 
Sbjct: 300 SVESLRLSDQTIQCLN--YAKSALHLLPSFKNLTRLEVHFDDPSCEVLADILRKSPKLEF 357

Query: 70  LIFQSGIDLSGNHKEGNWTFDPVPSCFSSHLKTIKICKFRGTAGELLVVKSLLKSAEKLR 129
           L    G  LS + ++  WT D +P CF S LK+  I  FRG   E+ +VK LL++   LR
Sbjct: 358 LHIYGGSYLSLDSED--WTSDSLPCCFKSSLKSCDISDFRGDEAEIRLVKFLLENVTLLR 415

Query: 130 EMDLKC 135
           EM++ C
Sbjct: 416 EMNIYC 421


>Medtr5g005690.1 | F-box/RNI superfamily protein, putative | LC |
           chr5:575870-577563 | 20130731
          Length = 489

 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 80/164 (48%), Gaps = 6/164 (3%)

Query: 5   GISCMKHLILTSFAFEGLTYSKELYACFPVLYKLECLAFLPTGKAINFGCGTMTNFLEKL 64
            +S +  L ++ FA + L     L A  P+ + L  L  + +  A++  C  + + L   
Sbjct: 327 ALSGVTKLSVSDFALQALCQPLLLAAHLPLFFNLVKLR-VTSPSAVDLSCEGLHSLLRNS 385

Query: 65  PCLELLIFQSGIDLSGNHKEGNWTFDPVPSCFSSHLKTIKICKFRGTAGELLVVKSLLKS 124
           P LE + F+ GI L+ N   G    +P+P CF + LK IKI  F G+ GEL  +K LL+ 
Sbjct: 386 PFLEKIEFKEGITLAAN---GGNLINPLPGCFWTKLKVIKIYDFCGSDGELNAIKFLLQE 442

Query: 125 AEKLREMDLKCLHDEFVG--GSARERSVLNELRMLPRASINCKI 166
              L  + ++     F    G+     +L ++   P+AS++C I
Sbjct: 443 TLVLDTLYIQYNESHFDSPEGTKMLDMLLEQIYEFPKASMDCDI 486


>Medtr3g107160.1 | F-box/RNI/FBD-like domain protein | LC |
           chr3:49427732-49426375 | 20130731
          Length = 389

 Score = 53.9 bits (128), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 47/146 (32%), Positives = 63/146 (43%), Gaps = 29/146 (19%)

Query: 33  PVLYKLECLAFLPTGKAINFGCGTMTNFLEKLPCLELLIFQSGIDLS-GNHKE------G 85
           P  + L  LA      +IN     +   L   P L+       I+LS G H E       
Sbjct: 258 PTFHNLTTLALY----SINSNWHLLAQVLNHCPNLQ------NIELSQGTHNEIIEGVEE 307

Query: 86  NWTFDP--VPSCFSSHLKTIKICKFRGTAGELLVVKSLLKSAEKLREMDLKCLHDEFVGG 143
           NW  DP  VP C S  L+T  I KF G   ELL+ K +LK+A  L+ M + C        
Sbjct: 308 NWE-DPISVPHCLSLKLQTCSILKFLGQESELLLAKHILKNARVLQTMKINC-------- 358

Query: 144 SARERSVLNELRMLPRASINCKIIFS 169
             +E     EL + PRAS  C+++  
Sbjct: 359 -GKELKTYRELLLCPRASPICEVVID 383


>Medtr7g023330.1 | F-box/RNI/FBD-like domain protein | LC |
           chr7:7638315-7639977 | 20130731
          Length = 396

 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 64/137 (46%), Gaps = 5/137 (3%)

Query: 2   FLRGISCMKHLILTSFAFEGLTYSKELYACFPVLYKLECLAFLPTGKAINFGCGTMTNFL 61
            L G+S +K L L+    + L +S++     P    L  L FL   +A  F    + + L
Sbjct: 240 LLSGLSSVKSLKLSEDFLQCLKFSEDTIQLLPSFQNLT-LLFL---RANTFTSEVVMDIL 295

Query: 62  EKLPCLELLIFQSGIDLSGNHKEGNWTFDPVPSCFSSHLKTIKICKFRGTAGELLVVKSL 121
            K P L+ L F  G  +S  H E +W    VP CF   LK+  +  FRG    +  +  +
Sbjct: 296 LKTPNLKALHFHVG-SVSFIHLEDDWPLLSVPCCFKYSLKSFCVSDFRGLEQHIQFINFV 354

Query: 122 LKSAEKLREMDLKCLHD 138
           LK+A+ L E+ + C  D
Sbjct: 355 LKNAKVLEEIRIVCSSD 371


>Medtr4g080773.4 | F-box/RNI/FBD-like domain protein | LC |
           chr4:31240480-31235653 | 20130731
          Length = 497

 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 8/136 (5%)

Query: 2   FLRGISCMKHLILTSFAFEGLTYSKELYACFPVLYKLECLAFLPTGKAINFGCG-TMTNF 60
            L G+S +K L L +   E L ++K+     P+    + L  L     I+      + N 
Sbjct: 307 LLSGLSNVKSLKLANDTLESLHHTKDTLHLLPLF---DNLTHLDVYSVISAKTNEVLMNI 363

Query: 61  LEKLPCLELLIFQSGIDLSGNHKEG-NWTFDPVPSCFSSHLKTIKICKFRGTAGELLVVK 119
           L+K P LE+L   + +    N+ +G +   + VP CF+S L  +    F G   E+  V 
Sbjct: 364 LQKTPKLEVLEIPAAV---LNYLDGEDLILNSVPCCFNSSLNRLCFSNFYGNEYEIQFVT 420

Query: 120 SLLKSAEKLREMDLKC 135
            +LK+A  LR++D+ C
Sbjct: 421 FILKNAPYLRKIDIHC 436


>Medtr4g080773.2 | F-box/RNI/FBD-like domain protein | LC |
           chr4:31240480-31235653 | 20130731
          Length = 497

 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 8/136 (5%)

Query: 2   FLRGISCMKHLILTSFAFEGLTYSKELYACFPVLYKLECLAFLPTGKAINFGCG-TMTNF 60
            L G+S +K L L +   E L ++K+     P+    + L  L     I+      + N 
Sbjct: 307 LLSGLSNVKSLKLANDTLESLHHTKDTLHLLPLF---DNLTHLDVYSVISAKTNEVLMNI 363

Query: 61  LEKLPCLELLIFQSGIDLSGNHKEG-NWTFDPVPSCFSSHLKTIKICKFRGTAGELLVVK 119
           L+K P LE+L   + +    N+ +G +   + VP CF+S L  +    F G   E+  V 
Sbjct: 364 LQKTPKLEVLEIPAAV---LNYLDGEDLILNSVPCCFNSSLNRLCFSNFYGNEYEIQFVT 420

Query: 120 SLLKSAEKLREMDLKC 135
            +LK+A  LR++D+ C
Sbjct: 421 FILKNAPYLRKIDIHC 436


>Medtr4g080773.3 | F-box/RNI/FBD-like domain protein | LC |
           chr4:31240480-31235653 | 20130731
          Length = 497

 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 8/136 (5%)

Query: 2   FLRGISCMKHLILTSFAFEGLTYSKELYACFPVLYKLECLAFLPTGKAINFGCG-TMTNF 60
            L G+S +K L L +   E L ++K+     P+    + L  L     I+      + N 
Sbjct: 307 LLSGLSNVKSLKLANDTLESLHHTKDTLHLLPLF---DNLTHLDVYSVISAKTNEVLMNI 363

Query: 61  LEKLPCLELLIFQSGIDLSGNHKEG-NWTFDPVPSCFSSHLKTIKICKFRGTAGELLVVK 119
           L+K P LE+L   + +    N+ +G +   + VP CF+S L  +    F G   E+  V 
Sbjct: 364 LQKTPKLEVLEIPAAV---LNYLDGEDLILNSVPCCFNSSLNRLCFSNFYGNEYEIQFVT 420

Query: 120 SLLKSAEKLREMDLKC 135
            +LK+A  LR++D+ C
Sbjct: 421 FILKNAPYLRKIDIHC 436


>Medtr4g080773.1 | F-box/RNI/FBD-like domain protein | LC |
           chr4:31240025-31236290 | 20130731
          Length = 503

 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 8/136 (5%)

Query: 2   FLRGISCMKHLILTSFAFEGLTYSKELYACFPVLYKLECLAFLPTGKAINFGCG-TMTNF 60
            L G+S +K L L +   E L ++K+     P+    + L  L     I+      + N 
Sbjct: 307 LLSGLSNVKSLKLANDTLESLHHTKDTLHLLPLF---DNLTHLDVYSVISAKTNEVLMNI 363

Query: 61  LEKLPCLELLIFQSGIDLSGNHKEG-NWTFDPVPSCFSSHLKTIKICKFRGTAGELLVVK 119
           L+K P LE+L   + +    N+ +G +   + VP CF+S L  +    F G   E+  V 
Sbjct: 364 LQKTPKLEVLEIPAAV---LNYLDGEDLILNSVPCCFNSSLNRLCFSNFYGNEYEIQFVT 420

Query: 120 SLLKSAEKLREMDLKC 135
            +LK+A  LR++D+ C
Sbjct: 421 FILKNAPYLRKIDIHC 436


>Medtr3g107120.1 | F-box/RNI/FBD-like domain protein | LC |
           chr3:49439140-49437711 | 20130731
          Length = 401

 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 55/124 (44%), Gaps = 13/124 (10%)

Query: 49  AINFGCGTMTNFLEKLPCLELLIFQSGIDLSGN-HKEGNWTFDP--VPSCFSSHLKTIKI 105
           +IN     +   L   P LE L    G  +    H + NW  DP  VP C S HLKT   
Sbjct: 278 SINSNWNLLVQVLNHCPKLENLELDEGSTIDRRLHVQKNWK-DPKFVPQCLSLHLKTCIF 336

Query: 106 CKFRGTAGELLVVKSLLKSAEKLREMDLKCLHDEFVGGSARERSVLNELRMLPRASINCK 165
             F G  GEL+    +LK+A  L+ M +        G  A E  V  EL + PR S  C+
Sbjct: 337 QNFIGQQGELMSTIYILKNARVLQTMSI-------CGVKALE--VERELSLCPRVSPICE 387

Query: 166 IIFS 169
           +I +
Sbjct: 388 VILN 391


>Medtr7g032380.1 | cyclin-like F-box protein | LC |
           chr7:11377322-11378607 | 20130731
          Length = 356

 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 5/114 (4%)

Query: 57  MTNFLEKLPCLELLIFQSGIDLSGNHKEGNWTFDP-VPSCFSSHLKTIKICKFRGTAGEL 115
           +T  L+  P L+ L    G       ++ +W   P VP CFSS LKT  +  ++G   + 
Sbjct: 247 LTKVLQHCPKLQNLTIHEGSSDRNKIEDVDWMDTPIVPECFSSQLKTCSLIGYKGMNCDF 306

Query: 116 LVVKSLLKSAEKLREMDLKCLHDEFVGGSARERSVLNELRMLPRASINCKIIFS 169
              K +LK+A+ L+ M +     +       +  +L +L + PR S  CKI F 
Sbjct: 307 QFAKYILKNAKVLQTMTINASPVDI----NIKHQILIKLTLCPRGSTTCKISFD 356


>Medtr1089s0010.1 | cyclin-like F-box protein | LC |
           scaffold1089:1726-502 | 20130731
          Length = 381

 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 3/116 (2%)

Query: 53  GCGTMTNFLEKLPCLELLIFQSGIDLSGNHKEGNWTFDPVPSCFSSHLKTIKICKFRGTA 112
           G   +   L++ P L+++  +     S + KE  W  + V  C SSHL++  I  F G+A
Sbjct: 266 GWDGIVQLLQQCPKLQIVFIRKW--RSSSSKEWKWP-NSVLECVSSHLRSCTILNFEGSA 322

Query: 113 GELLVVKSLLKSAEKLREMDLKCLHDEFVGGSARERSVLNELRMLPRASINCKIIF 168
             LL    +L++A  L++M +                ++ EL   PR S  CK+ F
Sbjct: 323 NNLLFATYILQNARFLQDMTIDVTTRSSNEMLLERSEIIEELSSCPRISPACKLTF 378