Miyakogusa Predicted Gene

Lj0g3v0264849.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0264849.1 tr|G7IJW3|G7IJW3_MEDTR Vacuolar protein
sorting-associated protein OS=Medicago truncatula
GN=MTR_2g0,65.39,0,seg,NULL; GB DEF: VPS13-LIKE PROTEIN,NULL; VACUOLAR
PROTEIN SORTING-ASSOCIATED PROTEIN (VPS13),Vacuo,CUFF.17732.1
         (577 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g007250.1 | vacuolar protein sorting-associated protein, p...   759   0.0  

>Medtr2g007250.1 | vacuolar protein sorting-associated protein,
            putative | HC | chr2:875474-913892 | 20130731
          Length = 3509

 Score =  759 bits (1960), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/577 (67%), Positives = 451/577 (78%), Gaps = 11/577 (1%)

Query: 4    SVKGMLPQLEVTFDTDILLNLLEFYDVFTSFSFYNKRVLLSLNGIGNDYTRLLSKVEYVS 63
            SVKGML QL+VTFD +ILLN+LEFY   TS   Y+KRVLLSLNGI N+ TRLLSK EYV 
Sbjct: 610  SVKGMLQQLQVTFDANILLNVLEFYGFVTSVKSYSKRVLLSLNGIENETTRLLSKAEYVG 669

Query: 64   LNHKNLMLDFTIFDISVNFPWRNTASEYSNLVMKSRSLCFKST-SLESLPSKVEEQPFTM 122
            +NH  +M D +IFDISVNFPWRNTASE SN+V+ SRSLCFKS    ES  S++ +QP+ +
Sbjct: 670  VNHGRVMWDVSIFDISVNFPWRNTASECSNMVIMSRSLCFKSKIGPESFLSEIGDQPYFL 729

Query: 123  KNFLNTTSTSGICLGIQLEDLYQYFDVKLNDFKITLMKCDQSQMITILEKFSCSTFLAFC 182
            KNF NT STS  C G++ +DLY Y DVKLNDFKIT++  DQSQ I+ILEKF+ S F+AFC
Sbjct: 730  KNFSNTISTSNDCSGVRFQDLYNYIDVKLNDFKITIVNSDQSQKISILEKFAASFFMAFC 789

Query: 183  VIPDESILNQMEVYVLIESLKAHFSPSMYCAFIELITHLDTSLVRGESEILNCDSHHKVV 242
            VIPDESIL Q+EVY+LIESLK HFS S+Y AFIEL TH+D+ LVRGESEI+N  S   +V
Sbjct: 790  VIPDESILKQLEVYMLIESLKVHFSHSIYGAFIELRTHMDSLLVRGESEIVNRVSPSNIV 849

Query: 243  SDVTKDSPFGLSIISKLGSVDLEVDLENSGDNSSELVVSLHDMDLRYSSAEFQEVFVSIK 302
            SDV+  S FG+SIIS+LGSVDLEVDLEN GD SS L+VSL ++ +RY+SAEFQE+F+S K
Sbjct: 850  SDVSAHSTFGISIISRLGSVDLEVDLENRGDKSSVLMVSLQEIYVRYASAEFQELFISTK 909

Query: 303  SLMICAHKIKEEKDCHFXXXXXXXXXXXXXXXXXXLPGPSIEFDQYSDGAMLADGCFEMH 362
            SLMI A+++KEEKD  F                  +PGPSIEFDQY D AMLAD CF MH
Sbjct: 910  SLMIRAYEVKEEKDDCFVLLSVNLSSPSASVPAHSVPGPSIEFDQYPDDAMLADACFAMH 969

Query: 363  YESPRSDIVCHKFFIYLNNADIHCYPHISGLLIGFFHRISAYNTMFEKSSESKTADISES 422
            YESPR+D+VCHK FIYLNNADIHCYPHI GL++GFFHR+SAY+T  EKS+ S T DIS+S
Sbjct: 970  YESPRTDLVCHKCFIYLNNADIHCYPHIVGLVVGFFHRLSAYSTSSEKSTASNTVDISKS 1029

Query: 423  FLSFGLQKFGFSNYFDFGSSDSACIPFDRFPFVTIYNHGSLGSLESSLVYAIPDWRKYFT 482
            F  FGLQKFGFSNYF+ G +DSACIPFD FPFVTIYN G L +LESSLVYAIPDWRKYFT
Sbjct: 1030 FSCFGLQKFGFSNYFEVGYADSACIPFDCFPFVTIYNSGPLDNLESSLVYAIPDWRKYFT 1089

Query: 483  LRERKIRSSKFNMRSGSKIFQSSPSKCKSGFE--CESGIERTSNVFSIELHLYGIRVHFH 540
            LR+RKI S K         F+ S SKCKS F    ESGI R SN FSIEL L+GIR HFH
Sbjct: 1090 LRDRKIISPKS--------FRVSSSKCKSDFGNLLESGIARMSNYFSIELQLFGIRAHFH 1141

Query: 541  DSSCIIGTIMVPTSKTSLLLCEDNIDILSSSEGLVLT 577
            DSSCIIG+I +PT K+SL  C+DN+DILSSSEGLVLT
Sbjct: 1142 DSSCIIGSITIPTCKSSLSFCDDNMDILSSSEGLVLT 1178