Miyakogusa Predicted Gene

Lj0g3v0264689.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0264689.2 Non Characterized Hit- tr|I1LAI0|I1LAI0_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.1015 PE=,64.2,3e-17,
,CUFF.17484.2
         (78 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g004180.1 | U2 small nuclear ribonucleoprotein A | HC | ch...   100   2e-22
Medtr6g004180.2 | U2 small nuclear ribonucleoprotein A | HC | ch...   100   3e-22

>Medtr6g004180.1 | U2 small nuclear ribonucleoprotein A | HC |
           chr6:160835-156691 | 20130731
          Length = 308

 Score =  100 bits (250), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/74 (71%), Positives = 61/74 (82%), Gaps = 1/74 (1%)

Query: 5   FYSMQAAIVNSQTLEEVARLEKALKSGLLPEDLKSLNGNVTLDNVNEKGEDVVHDESNDT 64
             +++AAIV+SQTLEEVARLEKALKSG LP DLKSL  N+ +DNVNEK +DVV DES DT
Sbjct: 236 IIAIKAAIVSSQTLEEVARLEKALKSGQLPADLKSLTDNIMIDNVNEK-QDVVPDESKDT 294

Query: 65  REQRNTDSAAMGQD 78
           +EQ NTDS AM QD
Sbjct: 295 QEQSNTDSTAMEQD 308


>Medtr6g004180.2 | U2 small nuclear ribonucleoprotein A | HC |
           chr6:161626-156383 | 20130731
          Length = 275

 Score =  100 bits (250), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 53/74 (71%), Positives = 61/74 (82%), Gaps = 1/74 (1%)

Query: 5   FYSMQAAIVNSQTLEEVARLEKALKSGLLPEDLKSLNGNVTLDNVNEKGEDVVHDESNDT 64
             +++AAIV+SQTLEEVARLEKALKSG LP DLKSL  N+ +DNVNEK +DVV DES DT
Sbjct: 203 IIAIKAAIVSSQTLEEVARLEKALKSGQLPADLKSLTDNIMIDNVNEK-QDVVPDESKDT 261

Query: 65  REQRNTDSAAMGQD 78
           +EQ NTDS AM QD
Sbjct: 262 QEQSNTDSTAMEQD 275