Miyakogusa Predicted Gene

Lj0g3v0264279.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0264279.1 Non Characterized Hit- tr|D8SRZ7|D8SRZ7_SELML
Putative uncharacterized protein (Fragment)
OS=Selagin,34.53,0.000000000005,OS03G0366900 PROTEIN,NULL; REPLICATION
PROTEIN A-RELATED,NULL; seg,NULL; no description,Nucleic
acid,CUFF.17423.1
         (178 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g020430.1 | OB-fold nucleic acid-binding domain protein | ...   225   2e-59
Medtr1g033230.1 | OB-fold nucleic acid-binding domain protein | ...   221   2e-58
Medtr5g020340.1 | PIF1-like helicase | LC | chr5:7773313-7775862...   139   1e-33

>Medtr5g020430.1 | OB-fold nucleic acid-binding domain protein | HC
           | chr5:7801241-7802041 | 20130731
          Length = 185

 Score =  225 bits (573), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 110/168 (65%), Positives = 131/168 (77%), Gaps = 6/168 (3%)

Query: 1   MQKQK---PISLQNTHVKLLAFDLLSLTPNPYSSDPSSTFYRRGIPLTRAETVGTVTLRD 57
           MQ+ K   PISL NTHVKLLAFDLL+LTP P S  P+ +F R  IP+TRAETVGT+TLRD
Sbjct: 1   MQQNKNPFPISLHNTHVKLLAFDLLTLTP-PIS--PNHSFTRNSIPITRAETVGTITLRD 57

Query: 58  HKPNRFLRFAIDDGTGCIPCILWLNQLSSPHLARRRSPQDLRLIADAAESSXXXXXXXXX 117
           HKP +FLRFAIDDGTGCIPCILWLN ++SPHLARRRSPQDL L+ADAA  S         
Sbjct: 58  HKPFKFLRFAIDDGTGCIPCILWLNHMTSPHLARRRSPQDLCLLADAAARSAEVVKVGNV 117

Query: 118 XXXXXXITAFRGSVQMTVSDVVLERDPNAEMVHWIECVNLARNCYNVL 165
                 +T ++G VQ+TV+DV+ ERDPN E++HW+ECVNLARNCYN++
Sbjct: 118 ARVRGRVTEYKGGVQITVTDVISERDPNVEVLHWVECVNLARNCYNLV 165


>Medtr1g033230.1 | OB-fold nucleic acid-binding domain protein | HC
           | chr1:11933993-11934825 | 20130731
          Length = 179

 Score =  221 bits (564), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 109/167 (65%), Positives = 129/167 (77%), Gaps = 6/167 (3%)

Query: 1   MQKQK---PISLQNTHVKLLAFDLLSLTPNPYSSDPSSTFYRRGIPLTRAETVGTVTLRD 57
           MQ+ K   PISL NTHVKLLAFDLL+LTP P S  P+ +F R  I +TRAETVGT+TLRD
Sbjct: 1   MQQNKNPFPISLHNTHVKLLAFDLLTLTP-PIS--PNHSFTRNSISITRAETVGTITLRD 57

Query: 58  HKPNRFLRFAIDDGTGCIPCILWLNQLSSPHLARRRSPQDLRLIADAAESSXXXXXXXXX 117
           HKP +FLRFAIDDGTGCIPCILWLN ++SPHLARRRSPQDL L+ADAA  S         
Sbjct: 58  HKPFKFLRFAIDDGTGCIPCILWLNHMTSPHLARRRSPQDLCLLADAAARSAEVVKIGNV 117

Query: 118 XXXXXXITAFRGSVQMTVSDVVLERDPNAEMVHWIECVNLARNCYNV 164
                 +T ++G VQ+TV+DV+ ERDPN E++HW+ECVNLARNCYN+
Sbjct: 118 ARVRGRVTEYKGGVQITVTDVISERDPNVEVLHWVECVNLARNCYNL 164


>Medtr5g020340.1 | PIF1-like helicase | LC | chr5:7773313-7775862 |
           20130731
          Length = 363

 Score =  139 bits (351), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 77/150 (51%), Positives = 97/150 (64%), Gaps = 19/150 (12%)

Query: 16  LLAFDLLSLTPNPYSSDPSSTFYRRGIPLTRAETVGTVTLRDHKPNRFLRFAIDDGTGCI 75
           LL   +L LTP P S  P+ +F R  +P+TR ET+ T+TL DHKP +FL FAID GT CI
Sbjct: 88  LLVPHVLHLTP-PLS--PNHSFIRNILPITRTETLATITLCDHKPFKFLGFAIDGGTCCI 144

Query: 76  PCILWLNQLSSPHLARRRSPQDLRLIADAAESSXXXXXXXXXXXXXXXITAFRGSVQMTV 135
           P ILWLN ++SP LAR RSPQDL L+ DAA                  +      VQ+T+
Sbjct: 145 PFILWLNHMTSPQLARWRSPQDLCLLVDAAAR----------------LAEVVKGVQITI 188

Query: 136 SDVVLERDPNAEMVHWIECVNLARNCYNVL 165
           ++VV ERD N E++H +ECVNLARNCYN+L
Sbjct: 189 TNVVGERDLNVEVLHLVECVNLARNCYNLL 218