Miyakogusa Predicted Gene

Lj0g3v0264079.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0264079.1 Non Characterized Hit- tr|I3SML4|I3SML4_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=4 SV=1,38.89,0.00003,
,CUFF.17410.1
         (116 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g059025.1 | animal RPA1 domain protein | LC | chr8:2054987...    51   3e-07

>Medtr8g059025.1 | animal RPA1 domain protein | LC |
          chr8:20549873-20550376 | 20130731
          Length = 138

 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 4/67 (5%)

Query: 1  MARSLNPLRSICIGIDPKKDTWRVKVRVLRVWDMFPVGEPSKPYVIHVVLIDVEGVKIEG 60
          M RS + L  I     P +D WR+KVR+LR+W++  +  P +   + +VLID +G KI  
Sbjct: 1  MDRSFDSLSEIV----PDRDGWRIKVRILRLWEVPTLLRPDQTNSLEMVLIDDKGAKIHA 56

Query: 61 IIKKAFL 67
           ++K  L
Sbjct: 57 SVRKQLL 63