Miyakogusa Predicted Gene

Lj0g3v0263999.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0263999.1 CUFF.17400.1
         (110 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g099150.2 | 50S ribosomal L30-like protein | HC | chr8:416...   142   5e-35
Medtr8g099150.1 | 50S ribosomal L30-like protein | HC | chr8:416...   142   5e-35
Medtr8g016300.2 | 50S ribosomal L30-like protein | HC | chr8:547...   142   7e-35
Medtr8g016300.1 | 50S ribosomal L30-like protein | HC | chr8:547...   142   7e-35

>Medtr8g099150.2 | 50S ribosomal L30-like protein | HC |
           chr8:41687399-41684763 | 20130731
          Length = 106

 Score =  142 bits (359), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 71/107 (66%), Positives = 84/107 (78%), Gaps = 3/107 (2%)

Query: 1   MSAFKAYKACAPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLGKCNRTVMRWNTPTVRG 60
           M+AFKAYK+C PIA+SPNLYITLVRGIPGTR+ HRRTLEALRLGKCNRTVMRWNTPTVRG
Sbjct: 3   MNAFKAYKSCVPIAYSPNLYITLVRGIPGTRKQHRRTLEALRLGKCNRTVMRWNTPTVRG 62

Query: 61  MLQQVLTEALHKSIICWKQLISLCPQTEGRSPPSPPLVINHQPAAAA 107
           M+QQV    + ++   +K   +   + E      PPLVINHQPA++A
Sbjct: 63  MIQQVKRLVVVETEEMYK---ARKEKEETHRALRPPLVINHQPASSA 106


>Medtr8g099150.1 | 50S ribosomal L30-like protein | HC |
           chr8:41687399-41684763 | 20130731
          Length = 106

 Score =  142 bits (359), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 71/107 (66%), Positives = 84/107 (78%), Gaps = 3/107 (2%)

Query: 1   MSAFKAYKACAPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLGKCNRTVMRWNTPTVRG 60
           M+AFKAYK+C PIA+SPNLYITLVRGIPGTR+ HRRTLEALRLGKCNRTVMRWNTPTVRG
Sbjct: 3   MNAFKAYKSCVPIAYSPNLYITLVRGIPGTRKQHRRTLEALRLGKCNRTVMRWNTPTVRG 62

Query: 61  MLQQVLTEALHKSIICWKQLISLCPQTEGRSPPSPPLVINHQPAAAA 107
           M+QQV    + ++   +K   +   + E      PPLVINHQPA++A
Sbjct: 63  MIQQVKRLVVVETEEMYK---ARKEKEETHRALRPPLVINHQPASSA 106


>Medtr8g016300.2 | 50S ribosomal L30-like protein | HC |
           chr8:5475719-5478648 | 20130731
          Length = 106

 Score =  142 bits (358), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 70/107 (65%), Positives = 84/107 (78%), Gaps = 3/107 (2%)

Query: 1   MSAFKAYKACAPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLGKCNRTVMRWNTPTVRG 60
           M+AFKA+K+C PIA+SPNLYITLVRGIPGTR+ HRRTLEALRLGKCNRTVMRWNTPTVRG
Sbjct: 3   MNAFKAFKSCVPIAYSPNLYITLVRGIPGTRKQHRRTLEALRLGKCNRTVMRWNTPTVRG 62

Query: 61  MLQQVLTEALHKSIICWKQLISLCPQTEGRSPPSPPLVINHQPAAAA 107
           M+QQV    + ++   +K   +   + E      PPLVINHQPA++A
Sbjct: 63  MIQQVKRLVVVETEEMYK---ARKEKEEAHRALRPPLVINHQPASSA 106


>Medtr8g016300.1 | 50S ribosomal L30-like protein | HC |
           chr8:5475719-5478648 | 20130731
          Length = 106

 Score =  142 bits (358), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 70/107 (65%), Positives = 84/107 (78%), Gaps = 3/107 (2%)

Query: 1   MSAFKAYKACAPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLGKCNRTVMRWNTPTVRG 60
           M+AFKA+K+C PIA+SPNLYITLVRGIPGTR+ HRRTLEALRLGKCNRTVMRWNTPTVRG
Sbjct: 3   MNAFKAFKSCVPIAYSPNLYITLVRGIPGTRKQHRRTLEALRLGKCNRTVMRWNTPTVRG 62

Query: 61  MLQQVLTEALHKSIICWKQLISLCPQTEGRSPPSPPLVINHQPAAAA 107
           M+QQV    + ++   +K   +   + E      PPLVINHQPA++A
Sbjct: 63  MIQQVKRLVVVETEEMYK---ARKEKEEAHRALRPPLVINHQPASSA 106