Miyakogusa Predicted Gene

Lj0g3v0262909.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0262909.1 tr|B9NCL2|B9NCL2_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_586270 PE=4
SV=1,68.18,0.00000001,seg,NULL; Tic22,Tic22-like,CUFF.17318.1
         (344 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g053110.1 | Tic22 family protein | HC | chr6:19048805-1906...   514   e-146
Medtr6g053110.2 | Tic22 family protein | HC | chr6:19048805-1906...   512   e-145

>Medtr6g053110.1 | Tic22 family protein | HC |
           chr6:19048805-19062097 | 20130731
          Length = 507

 Score =  514 bits (1324), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 267/347 (76%), Positives = 286/347 (82%), Gaps = 10/347 (2%)

Query: 1   MALPSEPHRRRRSNNPISSFLETTASNFASLFNPQIPSSPLTLTKSQPHPPSSISLPLFF 60
           MA PS PHRRR  +N +S+FL +TASNF SLFNP     P  L  S P  PS+ISL    
Sbjct: 1   MAQPSSPHRRRNHHNHLSTFLHSTASNFISLFNP---HPPPPLPSSTPQLPSAISL---- 53

Query: 61  APPLSTPTVDXXXXXXXXXXXXXXXXVRVTRLS---TNGKGGGPAFVGQVFSMCDLSGTG 117
              L  P                   VRV+RL+     G  GGPAFVGQVFSMCDLSGTG
Sbjct: 54  PLFLPPPLSTVTLSSTTESTRSSPKSVRVSRLNGKNITGGSGGPAFVGQVFSMCDLSGTG 113

Query: 118 LMAVSTHFDIPFISKRTPEWLKKVFAAITKSERNGPVFRFFIDLGDAVSYVKKLNIPSGV 177
           LMAVSTHFDIPFI+KRTPEWLKK+FAAITKSERNGPVFRFFIDLGDAVSYVKKLNIPSGV
Sbjct: 114 LMAVSTHFDIPFITKRTPEWLKKMFAAITKSERNGPVFRFFIDLGDAVSYVKKLNIPSGV 173

Query: 178 VGACRLDLAYEHFKEKPHLFQFVPNEKQVKEANKILKTNPHNGVRRKVDGVPVFSAQNLD 237
           VGACRLDLAYEHFKEKPHLFQFVPNEKQVK ANK+LKT PH+G  +KVDGVPVFSA NLD
Sbjct: 174 VGACRLDLAYEHFKEKPHLFQFVPNEKQVKAANKLLKTIPHSGFGKKVDGVPVFSAHNLD 233

Query: 238 IAIATTDGVKWYTPYFFDKKMLDNILEEAVDQHFHTLIQTRNMHRRRDVVDDNLAAEVIE 297
           IAIATTDG+KWYTPYFFDK MLDNILEEAVDQHFHTLIQTR++ RRRDVVDDNLAAEV+E
Sbjct: 234 IAIATTDGIKWYTPYFFDKNMLDNILEEAVDQHFHTLIQTRHIQRRRDVVDDNLAAEVVE 293

Query: 298 EMGDSLGDPPEVQELLDEMGHPSIPLSVISKAAELQFHYTVDKVLLG 344
           E+GDSLG+PPEVQE+LDEMGHPSIPLSVISKAAELQFHYTVDKVLLG
Sbjct: 294 EIGDSLGEPPEVQEVLDEMGHPSIPLSVISKAAELQFHYTVDKVLLG 340


>Medtr6g053110.2 | Tic22 family protein | HC |
           chr6:19048805-19061503 | 20130731
          Length = 377

 Score =  512 bits (1318), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 265/347 (76%), Positives = 285/347 (82%), Gaps = 10/347 (2%)

Query: 1   MALPSEPHRRRRSNNPISSFLETTASNFASLFNPQIPSSPLTLTKSQPHPPSSISLPLFF 60
           MA PS PHRRR  +N +S+FL +TASNF SLFNP  P    + T   P   S+ISL    
Sbjct: 1   MAQPSSPHRRRNHHNHLSTFLHSTASNFISLFNPHPPPPLPSSTPQLP---SAISL---- 53

Query: 61  APPLSTPTVDXXXXXXXXXXXXXXXXVRVTRLS---TNGKGGGPAFVGQVFSMCDLSGTG 117
              L  P                   VRV+RL+     G  GGPAFVGQVFSMCDLSGTG
Sbjct: 54  PLFLPPPLSTVTLSSTTESTRSSPKSVRVSRLNGKNITGGSGGPAFVGQVFSMCDLSGTG 113

Query: 118 LMAVSTHFDIPFISKRTPEWLKKVFAAITKSERNGPVFRFFIDLGDAVSYVKKLNIPSGV 177
           LMAVSTHFDIPFI+KRTPEWLKK+FAAITKSERNGPVFRFFIDLGDAVSYVKKLNIPSGV
Sbjct: 114 LMAVSTHFDIPFITKRTPEWLKKMFAAITKSERNGPVFRFFIDLGDAVSYVKKLNIPSGV 173

Query: 178 VGACRLDLAYEHFKEKPHLFQFVPNEKQVKEANKILKTNPHNGVRRKVDGVPVFSAQNLD 237
           VGACRLDLAYEHFKEKPHLFQFVPNEKQVK ANK+LKT PH+G  +KVDGVPVFSA NLD
Sbjct: 174 VGACRLDLAYEHFKEKPHLFQFVPNEKQVKAANKLLKTIPHSGFGKKVDGVPVFSAHNLD 233

Query: 238 IAIATTDGVKWYTPYFFDKKMLDNILEEAVDQHFHTLIQTRNMHRRRDVVDDNLAAEVIE 297
           IAIATTDG+KWYTPYFFDK MLDNILEEAVDQHFHTLIQTR++ RRRDVVDDNLAAEV+E
Sbjct: 234 IAIATTDGIKWYTPYFFDKNMLDNILEEAVDQHFHTLIQTRHIQRRRDVVDDNLAAEVVE 293

Query: 298 EMGDSLGDPPEVQELLDEMGHPSIPLSVISKAAELQFHYTVDKVLLG 344
           E+GDSLG+PPEVQE+LDEMGHPSIPLSVISKAAELQFHYTVDKVLLG
Sbjct: 294 EIGDSLGEPPEVQEVLDEMGHPSIPLSVISKAAELQFHYTVDKVLLG 340