Miyakogusa Predicted Gene

Lj0g3v0262589.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0262589.1 Non Characterized Hit- tr|I1IM10|I1IM10_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,63.41,2e-19,SUBFAMILY NOT NAMED,NULL;
SEC3/SYNTAXIN-RELATED,NULL,CUFF.17287.1
         (79 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g111590.1 | exocyst complex component SEC3B | HC | chr3:52...   149   5e-37
Medtr1g021680.1 | exocyst complex component SEC3B | HC | chr1:65...   110   3e-25

>Medtr3g111590.1 | exocyst complex component SEC3B | HC |
          chr3:52159615-52142380 | 20130731
          Length = 878

 Score =  149 bits (377), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 75/79 (94%), Positives = 77/79 (97%)

Query: 1  MAKSSADDAELRRACEAAIEGTKQKIVLSIRVVKTIGTWGKTSKLGRQMAKPRVLAISTK 60
          MAKSSADDAELRRACEAAIEGTKQKIV+SIRVVKT GTWGK +KLGRQMAKPRVLAISTK
Sbjct: 1  MAKSSADDAELRRACEAAIEGTKQKIVISIRVVKTHGTWGKAAKLGRQMAKPRVLAISTK 60

Query: 61 AKTQRTKAFLRVLKYSNGG 79
          AKTQRTKAFLRVLKYSNGG
Sbjct: 61 AKTQRTKAFLRVLKYSNGG 79


>Medtr1g021680.1 | exocyst complex component SEC3B | HC |
          chr1:6557770-6543295 | 20130731
          Length = 884

 Score =  110 bits (275), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 57/80 (71%), Positives = 63/80 (78%), Gaps = 1/80 (1%)

Query: 1  MAKSSADDAELRRACEAAIEGTKQKIVLSIRVVKTIGTWGKTSKL-GRQMAKPRVLAIST 59
          MAKS+ DD ELRRACE+AIE  KQKI+LSIRV K+ G  GK+SKL  R MAKPRVLA+ST
Sbjct: 1  MAKSTGDDVELRRACESAIEDPKQKIILSIRVAKSHGILGKSSKLSSRHMAKPRVLALST 60

Query: 60 KAKTQRTKAFLRVLKYSNGG 79
            K Q T AFLRVLKYS GG
Sbjct: 61 LTKGQTTTAFLRVLKYSTGG 80