Miyakogusa Predicted Gene

Lj0g3v0262469.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0262469.1 Non Characterized Hit- tr|I3T3J1|I3T3J1_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=4 SV=1,95.73,0,RING
FINGER,NULL; seg,NULL; no description,Zinc finger, RING/FYVE/PHD-type;
zf-rbx1,Zinc finger, RIN,CUFF.17281.1
         (117 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g088570.1 | anaphase-promoting complex subunit 11 RING-H2 ...   189   5e-49
Medtr4g046877.1 | anaphase-promoting complex subunit 11 RING-H2 ...   189   5e-49
Medtr4g007410.1 | anaphase-promoting complex subunit 11 RING-H2 ...    66   7e-12
Medtr7g005900.1 | anaphase-promoting complex subunit 11 RING-H2 ...    56   7e-09
Medtr7g005900.3 | anaphase-promoting complex subunit 11 RING-H2 ...    47   3e-06
Medtr7g005900.2 | anaphase-promoting complex subunit 11 RING-H2 ...    47   3e-06

>Medtr2g088570.1 | anaphase-promoting complex subunit 11 RING-H2
           finger protein | HC | chr2:37336904-37340640 | 20130731
          Length = 118

 Score =  189 bits (480), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 94/116 (81%), Positives = 95/116 (81%), Gaps = 2/116 (1%)

Query: 4   TLDSDVAMVXXXXXX--XXXXXXXXXXXRFEIKKWNAVALWAWDIVVDNCAICRNHIMDL 61
           TLDSDV MV                   RFEIKKWNAV+LWAWDIVVDNCAICRNHIMDL
Sbjct: 3   TLDSDVPMVPAGETSCCAHGGPSSKKPKRFEIKKWNAVSLWAWDIVVDNCAICRNHIMDL 62

Query: 62  CIECQANQASPTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 117
           CIECQANQAS TSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 63  CIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118


>Medtr4g046877.1 | anaphase-promoting complex subunit 11 RING-H2
           finger protein | HC | chr4:16748749-16744181 | 20130731
          Length = 117

 Score =  189 bits (480), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 95/115 (82%), Positives = 95/115 (82%), Gaps = 1/115 (0%)

Query: 4   TLDSDVAMVXXXXXXXXXXXXX-XXXXRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLC 62
           TLDSDV MV                  RFEIKKWNAVALWAWDIVVDNCAICRNHIMDLC
Sbjct: 3   TLDSDVTMVPAGEPSSSAAGPSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLC 62

Query: 63  IECQANQASPTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 117
           IECQANQAS TSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 63  IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 117


>Medtr4g007410.1 | anaphase-promoting complex subunit 11 RING-H2
           finger protein | HC | chr4:1024420-1022587 | 20130731
          Length = 88

 Score = 66.2 bits (160), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 45/81 (55%), Gaps = 8/81 (9%)

Query: 36  WNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASPTSEECTVAWGVCNHAFHFHCISR 95
           W+AVA W WD   + C ICR      C +C+        ++C + WG CNHAFH HCI +
Sbjct: 12  WHAVASWTWDAQDETCGICRMAFDGCCPDCKL-----PGDDCPLIWGACNHAFHLHCILK 66

Query: 96  WLKTRQV---CPLDNSEWEFQ 113
           W+ ++     CP+   EW+F+
Sbjct: 67  WVNSQTSQAHCPMCRREWQFK 87


>Medtr7g005900.1 | anaphase-promoting complex subunit 11 RING-H2
           finger protein | HC | chr7:384218-382340 | 20130731
          Length = 77

 Score = 56.2 bits (134), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 8/74 (10%)

Query: 43  AWDIVVDNCAICRNHIMDLCIECQANQASPTSEECTVAWGVCNHAFHFHCISRWLKTRQV 102
            WD   + C ICR      C +C+        ++C + WG CNHAFH HCI +W+ ++  
Sbjct: 8   TWDAQDETCGICRMAFDGCCPDCKL-----PGDDCPLIWGACNHAFHLHCILKWVNSQTS 62

Query: 103 ---CPLDNSEWEFQ 113
              CP+   EW+F+
Sbjct: 63  QAHCPMCRREWQFK 76


>Medtr7g005900.3 | anaphase-promoting complex subunit 11 RING-H2
           finger protein | HC | chr7:383996-382340 | 20130731
          Length = 57

 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 3/44 (6%)

Query: 73  TSEECTVAWGVCNHAFHFHCISRWLKTRQV---CPLDNSEWEFQ 113
             ++C + WG CNHAFH HCI +W+ ++     CP+   EW+F+
Sbjct: 13  PGDDCPLIWGACNHAFHLHCILKWVNSQTSQAHCPMCRREWQFK 56


>Medtr7g005900.2 | anaphase-promoting complex subunit 11 RING-H2
           finger protein | HC | chr7:383996-382340 | 20130731
          Length = 57

 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 3/44 (6%)

Query: 73  TSEECTVAWGVCNHAFHFHCISRWLKTRQV---CPLDNSEWEFQ 113
             ++C + WG CNHAFH HCI +W+ ++     CP+   EW+F+
Sbjct: 13  PGDDCPLIWGACNHAFHLHCILKWVNSQTSQAHCPMCRREWQFK 56