Miyakogusa Predicted Gene

Lj0g3v0262109.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0262109.1 tr|Q9FGE6|Q9FGE6_ARATH CTC-interacting domain 13
protein OS=Arabidopsis thaliana GN=CID13 PE=4
SV=1,46.67,0.000000004,RNA-binding domain, RBD,NULL; SUBFAMILY NOT
NAMED,NULL; FAMILY NOT NAMED,NULL; RRM,RNA recognition m,CUFF.17275.1
         (125 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g092550.1 | CTC-interacting domain protein | HC | chr3:422...   167   2e-42
Medtr3g092510.1 | CTC-interacting domain protein | HC | chr3:422...   152   9e-38
Medtr2g070540.1 | CTC-interacting domain protein | HC | chr2:297...   125   7e-30

>Medtr3g092550.1 | CTC-interacting domain protein | HC |
           chr3:42290596-42284870 | 20130731
          Length = 384

 Score =  167 bits (423), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 83/125 (66%), Positives = 88/125 (70%), Gaps = 33/125 (26%)

Query: 1   MCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFFEFTVAESAIAA 60
           MC+RTIYCTN+DKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAF EF VAESAIAA
Sbjct: 293 MCTRTIYCTNLDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFVEFAVAESAIAA 352

Query: 61  LSCSGVALGSLPIRVGDRFSLISRTNVLETRATLLMSLQLFSCLVCRVSPSKTPVRSRVL 120
           LSCSGV LGSLPI                                 RVSPSKTPVR+R +
Sbjct: 353 LSCSGVVLGSLPI---------------------------------RVSPSKTPVRARAV 379

Query: 121 RSPMH 125
           R+PMH
Sbjct: 380 RTPMH 384



 Score = 58.5 bits (140), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/95 (37%), Positives = 52/95 (54%), Gaps = 6/95 (6%)

Query: 1   MCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFFEFTVAESAIAA 60
           M  RT+Y ++ID+++T+  +   F + CG+V   R+ GD +   R AF EFT    A AA
Sbjct: 196 MIRRTVYVSDIDQQVTEEQLAALFLN-CGQVVDCRVCGDPNSILRFAFVEFTDEVGARAA 254

Query: 61  LSCSGVALGSLPIRVGDRFSLISRTNVLETRATLL 95
           L+ SG  LG  P+RV     L S+T +     T L
Sbjct: 255 LNLSGTMLGYYPLRV-----LPSKTAIAPVNPTFL 284


>Medtr3g092510.1 | CTC-interacting domain protein | HC |
           chr3:42267137-42262435 | 20130731
          Length = 376

 Score =  152 bits (383), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 81/124 (65%), Positives = 83/124 (66%), Gaps = 34/124 (27%)

Query: 1   MCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFFEFTVAESAIAA 60
           MCSRTIYCTNIDKKLTQADVKHFFESICGEV RLRLLGDY HSTRIAF EF VAESAIAA
Sbjct: 286 MCSRTIYCTNIDKKLTQADVKHFFESICGEVHRLRLLGDYQHSTRIAFVEFAVAESAIAA 345

Query: 61  LSCSGVALGSLPIRVGDRFSLISRTNVLETRATLLMSLQLFSCLVCRVSPSKTPVRSRVL 120
           LSCSGV LG+LPI                                 RVSPSKTPVR+R  
Sbjct: 346 LSCSGVILGALPI---------------------------------RVSPSKTPVRARSS 372

Query: 121 -RSP 123
            RSP
Sbjct: 373 PRSP 376



 Score = 62.8 bits (151), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 38/95 (40%), Positives = 53/95 (55%), Gaps = 6/95 (6%)

Query: 1   MCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFFEFTVAESAIAA 60
           M  RT+Y ++ID+ +T+  +   F + CG+V   R+ GD +   R AF EFT  ESA AA
Sbjct: 189 MIRRTVYVSDIDQLVTEEQLASLFLN-CGQVVDCRVCGDPNSILRFAFIEFTDEESARAA 247

Query: 61  LSCSGVALGSLPIRVGDRFSLISRTNVLETRATLL 95
           +S SG  LG  P+RV     L S+T +     T L
Sbjct: 248 VSLSGTMLGYYPLRV-----LPSKTAIAPVNPTFL 277


>Medtr2g070540.1 | CTC-interacting domain protein | HC |
           chr2:29723724-29729859 | 20130731
          Length = 298

 Score =  125 bits (315), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 67/121 (55%), Positives = 77/121 (63%), Gaps = 33/121 (27%)

Query: 1   MCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFFEFTVAESAIAA 60
           MC+RT+YCTNIDKK++QA+VK+FFES CGEV RLRLLGD  HSTRIAF EF +AESAI A
Sbjct: 207 MCTRTVYCTNIDKKISQAEVKNFFESSCGEVTRLRLLGDQVHSTRIAFVEFAMAESAIVA 266

Query: 61  LSCSGVALGSLPIRVGDRFSLISRTNVLETRATLLMSLQLFSCLVCRVSPSKTPVRSRVL 120
           L+CSG+ LG+ PI                                 RVSPSKTPVR RV 
Sbjct: 267 LNCSGMLLGTQPI---------------------------------RVSPSKTPVRPRVA 293

Query: 121 R 121
           R
Sbjct: 294 R 294



 Score = 60.1 bits (144), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 49/92 (53%), Gaps = 6/92 (6%)

Query: 4   RTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFFEFTVAESAIAALSC 63
           RT+Y ++ID+ +T+  +   F + CG+V   R+ GD H   R AF EF     A AAL+ 
Sbjct: 113 RTVYVSDIDQHVTEERLAALFTN-CGQVIDCRICGDPHSVLRFAFVEFADEHGARAALNL 171

Query: 64  SGVALGSLPIRVGDRFSLISRTNVLETRATLL 95
            G  LG  P+RV     L S+T +L    T L
Sbjct: 172 GGTVLGYYPVRV-----LPSKTAILPVNPTFL 198