Miyakogusa Predicted Gene

Lj0g3v0261929.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0261929.2 Non Characterized Hit- tr|I1LLB7|I1LLB7_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
PE=4,77.5,0,INTEGRATOR COMPLEX SUBUNIT 9,NULL; CLEAVAGE AND
POLYADENYLATION SPECIFICITY FACTOR,NULL,CUFF.17237.2
         (443 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g019010.1 | integrator complex subunit-like protein | HC |...   367   e-101
Medtr3g019025.1 | integrator complex subunit-like protein | HC |...   166   6e-41
Medtr3g019030.1 | hypothetical protein | HC | chr3:5293262-52920...    89   1e-17

>Medtr3g019010.1 | integrator complex subunit-like protein | HC |
           chr3:5286680-5283325 | 20130731
          Length = 536

 Score =  367 bits (942), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 183/237 (77%), Positives = 205/237 (86%)

Query: 206 AADVKDCLLKIHTLKYAEEACYNGTLVIKAFSSGVEIGSCNWIMNGPKGDIAYLSSSSFF 265
            ADVKD + KI+TL YA+EACYNGTLVIKAFSSGVEIGS NW +NGPKGDIAYLSSS FF
Sbjct: 9   GADVKDSIQKINTLNYAQEACYNGTLVIKAFSSGVEIGSSNWTLNGPKGDIAYLSSSCFF 68

Query: 266 SAHAMTFDYRSLQGSCTLIYSDFSALSDVQEVEAGDSYSIRTADALLPQSVQDLDEFNLN 325
           SAHAM FDY SLQ + TLIYSDFS+L D Q+VE GD+Y+  T+D LLP S +D D F+L+
Sbjct: 69  SAHAMAFDYSSLQRTSTLIYSDFSSLIDAQDVEDGDNYTDPTSDKLLPPSFEDSDGFSLD 128

Query: 326 SDENSEEKEKLVFICSCAIECVKIGGSVLVPVNRLGTILQLLEEITTSLEALAMKVPVYI 385
           SD N +EKEKLVFICSCAIECVK GGSVL+P+NRLGTILQLLEE+ T LEA AM+VP+YI
Sbjct: 129 SDVNLDEKEKLVFICSCAIECVKDGGSVLIPINRLGTILQLLEEMATLLEASAMEVPIYI 188

Query: 386 ISSVAEELLALLNVIPEWLCKQRQERLFAGEPLFAHVKLLKEKKIHVVPDVLSPQLL 442
           ISSVAEELLALLN+IPEWL KQRQERLFAGEPLF HVKLLKEKKI VVP++ S QLL
Sbjct: 189 ISSVAEELLALLNIIPEWLSKQRQERLFAGEPLFDHVKLLKEKKIRVVPNIHSHQLL 245


>Medtr3g019025.1 | integrator complex subunit-like protein | HC |
           chr3:5291909-5291553 | 20130731
          Length = 90

 Score =  166 bits (419), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 76/89 (85%), Positives = 84/89 (94%)

Query: 116 MGIMGLPFLTRTKGFSAKIYVTEASARLGQLMMEELVSMHGEFRQFYGPGESNFPPWLKQ 175
           MGIMGLP+LTR KGFSAKIYVTEASAR+GQLMME+LVSMH EFRQFYGP ESNFPPWL+Q
Sbjct: 1   MGIMGLPYLTRQKGFSAKIYVTEASARIGQLMMEDLVSMHAEFRQFYGPEESNFPPWLRQ 60

Query: 176 EELEMLPSILREIISGKDGGELGGWMPLY 204
           EELE+LPS+L+EI+ GKDG ELGGWMPLY
Sbjct: 61  EELEILPSVLKEILVGKDGVELGGWMPLY 89


>Medtr3g019030.1 | hypothetical protein | HC | chr3:5293262-5292058
           | 20130731
          Length = 146

 Score = 88.6 bits (218), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/43 (83%), Positives = 39/43 (90%)

Query: 1   MKFTCLSKGDGFHFPPCHMLEFCGIRILLDCPLDLSALIAFSP 43
           MK TCLSKG GFHFPPCHML FCG+RIL DCPLDLS+L+AFSP
Sbjct: 94  MKLTCLSKGRGFHFPPCHMLNFCGVRILFDCPLDLSSLMAFSP 136