Miyakogusa Predicted Gene
- Lj0g3v0261919.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0261919.1 Non Characterized Hit- tr|B9SDQ1|B9SDQ1_RICCO
Ubiquitin carboxyl-terminal hydrolase, putative
OS=Ric,45.98,0.000000000000005,MATH,MATH; no description,TRAF-type;
TRAF domain-like,TRAF-like,CUFF.17234.1
(89 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr3g079840.1 | ubiquitin carboxyl-terminal hydrolase-like pro... 77 3e-15
Medtr3g079840.2 | ubiquitin carboxyl-terminal hydrolase-like pro... 77 3e-15
Medtr5g086700.1 | ubiquitin carboxyl-terminal hydrolase-like pro... 77 3e-15
Medtr5g086700.2 | ubiquitin carboxyl-terminal hydrolase-like pro... 77 3e-15
Medtr1g041240.1 | ubiquitin carboxyl-terminal hydrolase-like pro... 73 5e-14
Medtr1g041240.2 | ubiquitin carboxyl-terminal hydrolase-like pro... 73 5e-14
Medtr1g041240.3 | ubiquitin carboxyl-terminal hydrolase-like pro... 73 5e-14
Medtr5g091450.1 | MATH (meprin and TRAF-C-like) domain protein |... 66 7e-12
Medtr1g042160.2 | MATH domain protein | HC | chr1:15824709-15827... 62 1e-10
Medtr1g042160.1 | MATH domain protein | HC | chr1:15824760-15827... 62 1e-10
Medtr5g091550.1 | ubiquitin carboxyl-terminal hydrolase | HC | c... 59 7e-10
Medtr5g091550.2 | ubiquitin carboxyl-terminal hydrolase | HC | c... 59 7e-10
Medtr5g091180.1 | ubiquitin carboxyl-terminal hydrolase, putativ... 56 8e-09
Medtr7g107200.1 | MATH (meprin and TRAF-C-like) domain protein |... 55 1e-08
Medtr8g011730.1 | MATH domain protein | LC | chr8:3242928-324428... 52 1e-07
Medtr7g107160.1 | MATH domain protein | LC | chr7:43693556-43690... 46 1e-05
>Medtr3g079840.1 | ubiquitin carboxyl-terminal hydrolase-like
protein | HC | chr3:36048639-36064377 | 20130731
Length = 1119
Score = 77.4 bits (189), Expect = 3e-15, Method: Composition-based stats.
Identities = 34/77 (44%), Positives = 51/77 (66%), Gaps = 1/77 (1%)
Query: 11 RQKFTWTIKEFTNKLKMDNLYSDYFLLGGYIWRLALCTKENGKNNLSLYLDVPGSSDYPF 70
+ +FTW I FT +L LYS+ F++G Y WR+ + K N + LS+YLDV S+ P+
Sbjct: 55 QTRFTWRIDNFT-RLNTKKLYSEVFVVGAYKWRVLIFPKGNNVDYLSMYLDVADSTSLPY 113
Query: 71 GWSRDVSFSLSLIDQVH 87
GWSR FSL++++Q+H
Sbjct: 114 GWSRYAQFSLAIVNQIH 130
>Medtr3g079840.2 | ubiquitin carboxyl-terminal hydrolase-like
protein | HC | chr3:36048376-36064377 | 20130731
Length = 1118
Score = 77.4 bits (189), Expect = 3e-15, Method: Composition-based stats.
Identities = 34/77 (44%), Positives = 51/77 (66%), Gaps = 1/77 (1%)
Query: 11 RQKFTWTIKEFTNKLKMDNLYSDYFLLGGYIWRLALCTKENGKNNLSLYLDVPGSSDYPF 70
+ +FTW I FT +L LYS+ F++G Y WR+ + K N + LS+YLDV S+ P+
Sbjct: 54 QTRFTWRIDNFT-RLNTKKLYSEVFVVGAYKWRVLIFPKGNNVDYLSMYLDVADSTSLPY 112
Query: 71 GWSRDVSFSLSLIDQVH 87
GWSR FSL++++Q+H
Sbjct: 113 GWSRYAQFSLAIVNQIH 129
>Medtr5g086700.1 | ubiquitin carboxyl-terminal hydrolase-like
protein | HC | chr5:37479517-37457082 | 20130731
Length = 1123
Score = 77.0 bits (188), Expect = 3e-15, Method: Composition-based stats.
Identities = 33/75 (44%), Positives = 51/75 (68%), Gaps = 1/75 (1%)
Query: 13 KFTWTIKEFTNKLKMDNLYSDYFLLGGYIWRLALCTKENGKNNLSLYLDVPGSSDYPFGW 72
+FTW I F+ ++ + LYSD F++G Y WR+ + K N + LS+YLDV S+ P+GW
Sbjct: 61 RFTWRIDNFS-RVNLKKLYSDVFVVGSYKWRVLIFPKGNNVDYLSMYLDVADSTSLPYGW 119
Query: 73 SRDVSFSLSLIDQVH 87
SR FSL++++Q+H
Sbjct: 120 SRYAQFSLAVVNQIH 134
>Medtr5g086700.2 | ubiquitin carboxyl-terminal hydrolase-like
protein | HC | chr5:37479368-37457121 | 20130731
Length = 1120
Score = 77.0 bits (188), Expect = 3e-15, Method: Composition-based stats.
Identities = 33/75 (44%), Positives = 51/75 (68%), Gaps = 1/75 (1%)
Query: 13 KFTWTIKEFTNKLKMDNLYSDYFLLGGYIWRLALCTKENGKNNLSLYLDVPGSSDYPFGW 72
+FTW I F+ ++ + LYSD F++G Y WR+ + K N + LS+YLDV S+ P+GW
Sbjct: 61 RFTWRIDNFS-RVNLKKLYSDVFVVGSYKWRVLIFPKGNNVDYLSMYLDVADSTSLPYGW 119
Query: 73 SRDVSFSLSLIDQVH 87
SR FSL++++Q+H
Sbjct: 120 SRYAQFSLAVVNQIH 134
>Medtr1g041240.1 | ubiquitin carboxyl-terminal hydrolase-like
protein | HC | chr1:18377655-18355307 | 20130731
Length = 1119
Score = 73.2 bits (178), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 13 KFTWTIKEFTNKLKMDNLYSDYFLLGGYIWRLALCTKENGKNNLSLYLDVPGSSDYPFGW 72
+FTWTI F+ K YSD F +GGY WR+ + K N +LS+Y+DV + P+GW
Sbjct: 59 RFTWTIDNFSRLPK--KHYSDVFTVGGYKWRILIFPKGNNAEHLSMYIDVADAGSMPYGW 116
Query: 73 SRDVSFSLSLIDQVHG 88
+R FSL++++QVH
Sbjct: 117 TRFAQFSLTVVNQVHS 132
>Medtr1g041240.2 | ubiquitin carboxyl-terminal hydrolase-like
protein | HC | chr1:18377688-18355186 | 20130731
Length = 1118
Score = 73.2 bits (178), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 13 KFTWTIKEFTNKLKMDNLYSDYFLLGGYIWRLALCTKENGKNNLSLYLDVPGSSDYPFGW 72
+FTWTI F+ K YSD F +GGY WR+ + K N +LS+Y+DV + P+GW
Sbjct: 58 RFTWTIDNFSRLPK--KHYSDVFTVGGYKWRILIFPKGNNAEHLSMYIDVADAGSMPYGW 115
Query: 73 SRDVSFSLSLIDQVHG 88
+R FSL++++QVH
Sbjct: 116 TRFAQFSLTVVNQVHS 131
>Medtr1g041240.3 | ubiquitin carboxyl-terminal hydrolase-like
protein | HC | chr1:18377688-18355186 | 20130731
Length = 1117
Score = 73.2 bits (178), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 13 KFTWTIKEFTNKLKMDNLYSDYFLLGGYIWRLALCTKENGKNNLSLYLDVPGSSDYPFGW 72
+FTWTI F+ K YSD F +GGY WR+ + K N +LS+Y+DV + P+GW
Sbjct: 57 RFTWTIDNFSRLPK--KHYSDVFTVGGYKWRILIFPKGNNAEHLSMYIDVADAGSMPYGW 114
Query: 73 SRDVSFSLSLIDQVHG 88
+R FSL++++QVH
Sbjct: 115 TRFAQFSLTVVNQVHS 130
>Medtr5g091450.1 | MATH (meprin and TRAF-C-like) domain protein | LC
| chr5:39868751-39863030 | 20130731
Length = 792
Score = 66.2 bits (160), Expect = 7e-12, Method: Composition-based stats.
Identities = 33/76 (43%), Positives = 50/76 (65%), Gaps = 2/76 (2%)
Query: 13 KFTWTIKEFTNKLKMDNLYSDYFLLGGYIWRLALCTKENG-KNNLSLYLDVPGSSDYPFG 71
+FTW I F++ + LYSD F +GGY WR+ L K N ++LS+YLDV S++ P G
Sbjct: 33 RFTWRIGGFSS-INTIKLYSDVFEVGGYKWRVLLFPKGNNVSDHLSMYLDVQDSANLPNG 91
Query: 72 WSRDVSFSLSLIDQVH 87
WS FSL++++Q++
Sbjct: 92 WSSYAQFSLTVVNQIN 107
>Medtr1g042160.2 | MATH domain protein | HC |
chr1:15824709-15827639 | 20130731
Length = 309
Score = 62.0 bits (149), Expect = 1e-10, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 12 QKFTWTIKEFTNKLKMDNLYSDYFLLGGYIWRLALCTK--ENGKNNLSLYLDVPGSSDYP 69
+KFTW I+ F+ +L +D LYS+ ++L GY WR+AL K + + L ++L+ +++
Sbjct: 12 EKFTWKIENFS-RLNVDKLYSEPYVLSGYPWRIALFPKGSSSAVDQLGIFLEAMKTANMS 70
Query: 70 FGWSRDVSFSLSLIDQVHGN 89
GW RD F ++ +QV N
Sbjct: 71 EGWKRDAKFKFAVFNQVEDN 90
>Medtr1g042160.1 | MATH domain protein | HC |
chr1:15824760-15827536 | 20130731
Length = 309
Score = 62.0 bits (149), Expect = 1e-10, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 12 QKFTWTIKEFTNKLKMDNLYSDYFLLGGYIWRLALCTK--ENGKNNLSLYLDVPGSSDYP 69
+KFTW I+ F+ +L +D LYS+ ++L GY WR+AL K + + L ++L+ +++
Sbjct: 12 EKFTWKIENFS-RLNVDKLYSEPYVLSGYPWRIALFPKGSSSAVDQLGIFLEAMKTANMS 70
Query: 70 FGWSRDVSFSLSLIDQVHGN 89
GW RD F ++ +QV N
Sbjct: 71 EGWKRDAKFKFAVFNQVEDN 90
>Medtr5g091550.1 | ubiquitin carboxyl-terminal hydrolase | HC |
chr5:39914063-39909438 | 20130731
Length = 483
Score = 59.3 bits (142), Expect = 7e-10, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 12 QKFTWTIKEFTNKLKMDNLYSDYFLLGGYIWRLALCTKENGKNNLSLYLDVPGSSDYPFG 71
Q +TW + F+ +++ LYSD F GGY WR + + N + LS+YL S+ P G
Sbjct: 18 QSYTWRTERFS-RVRATVLYSDVFEAGGYKWRAIIHPRGNNTDYLSIYLCTADSASLPDG 76
Query: 72 WSRDVSFSLSLIDQV 86
WS V F+L +++Q+
Sbjct: 77 WSSYVEFTLKVVNQI 91
>Medtr5g091550.2 | ubiquitin carboxyl-terminal hydrolase | HC |
chr5:39914063-39909438 | 20130731
Length = 488
Score = 59.3 bits (142), Expect = 7e-10, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 12 QKFTWTIKEFTNKLKMDNLYSDYFLLGGYIWRLALCTKENGKNNLSLYLDVPGSSDYPFG 71
Q +TW + F+ +++ LYSD F GGY WR + + N + LS+YL S+ P G
Sbjct: 18 QSYTWRTERFS-RVRATVLYSDVFEAGGYKWRAIIHPRGNNTDYLSIYLCTADSASLPDG 76
Query: 72 WSRDVSFSLSLIDQV 86
WS V F+L +++Q+
Sbjct: 77 WSSYVEFTLKVVNQI 91
>Medtr5g091180.1 | ubiquitin carboxyl-terminal hydrolase, putative |
LC | chr5:39731988-39738190 | 20130731
Length = 711
Score = 55.8 bits (133), Expect = 8e-09, Method: Composition-based stats.
Identities = 30/79 (37%), Positives = 49/79 (62%), Gaps = 6/79 (7%)
Query: 13 KFTWTIKEFT--NKLKMDNLYSDYFLLGGYIWRLALCTK-ENGKNNLSLYLDVPGSSDYP 69
KFTW I+ F+ N++K L SD F +GGY W + + + +N ++LS+Y V S + P
Sbjct: 46 KFTWRIERFSWRNEIK---LCSDVFDVGGYKWHVIIFPEGDNAMDHLSMYFGVADSENLP 102
Query: 70 FGWSRDVSFSLSLIDQVHG 88
GWS F++SL++Q++
Sbjct: 103 NGWSIYAQFTMSLVNQINA 121
>Medtr7g107200.1 | MATH (meprin and TRAF-C-like) domain protein |
LC | chr7:43710995-43709256 | 20130731
Length = 378
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
Query: 1 MENQLENGLTRQKFTWTIKEFTNKLKMDNLYSDYFLLGGYIWRLALCTKENG--KNNLSL 58
ME+Q +KF+W +++F + +YS+ F+L GY WR+ + NG N++S+
Sbjct: 1 MEDQQSRFELFEKFSWKVEKFARVSSIQKVYSEPFVLCGYPWRILVYPYGNGDNTNSMSI 60
Query: 59 YLDVPGSSDYPFGWSRDVSFSLSLIDQ 85
YLD S + G +RDV+F L + +Q
Sbjct: 61 YLDTMQSPNSYQGGTRDVTFRLVVFNQ 87
>Medtr8g011730.1 | MATH domain protein | LC | chr8:3242928-3244284
| 20130731
Length = 356
Score = 51.6 bits (122), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 8/84 (9%)
Query: 10 TRQKFTWTIKEFTNKLKMDN-LYSDYFLLGGYIWRLALCTKENGKN----NLSLYLDVPG 64
T ++FTWTIK F+ K D+ +YSD F L GY WR+ + K N N +LS+ V
Sbjct: 11 TIEQFTWTIKNFS---KCDSQMYSDSFFLNGYPWRIVMNPKGNENNSGYLSLSILSVVAD 67
Query: 65 SSDYPFGWSRDVSFSLSLIDQVHG 88
+D+ W R V+ L+L +Q +
Sbjct: 68 ITDFSKDWKRYVNLELALTNQANA 91
>Medtr7g107160.1 | MATH domain protein | LC | chr7:43693556-43690971
| 20130731
Length = 447
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 23/108 (21%)
Query: 2 ENQLENGLTRQK---------FTWTIKEFTNKLKMDNLYSDYFLLGGYIWRLALCTKE-- 50
E Q+E G T K FTW ++ F+ YS+ F+LGGY W A+C +
Sbjct: 110 EGQVEFGDTEHKQSIVEKFETFTWNVENFSRW--NGGTYSEPFVLGGYPW-YAICMNKFS 166
Query: 51 ---------NGKNNLSLYLDVPGSSDYPFGWSRDVSFSLSLIDQVHGN 89
+ +LS++L V +++ GWSR V F L +++QV N
Sbjct: 167 HEDTSYQWGDNVGDLSIFLSVVETANMSKGWSRHVKFKLFVLNQVDSN 214