Miyakogusa Predicted Gene

Lj0g3v0261819.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0261819.1 Non Characterized Hit- tr|I1LLA9|I1LLA9_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.56234 PE,91.81,0,Class
II aaRS ABD-related,Anticodon-binding; no description,Brix domain; no
description,NULL; Brix,B,CUFF.17226.1
         (293 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g019370.1 | U3 small nucleolar IMP4-like ribonucleoprotein...   520   e-148
Medtr8g023820.1 | ribosome production factor-like protein | HC |...   148   6e-36

>Medtr3g019370.1 | U3 small nucleolar IMP4-like ribonucleoprotein |
           HC | chr3:5435201-5441777 | 20130731
          Length = 291

 Score =  520 bits (1338), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 249/291 (85%), Positives = 266/291 (91%)

Query: 1   MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALQEGKAIPTXXXXXXXXXXXXIDLE 60
           MLRRN RLRREY+YRKSLEGKER+ YE KRKIREAL+EGK IPT            IDLE
Sbjct: 1   MLRRNQRLRREYIYRKSLEGKERIHYENKRKIREALREGKPIPTELRNEEAALRREIDLE 60

Query: 61  DENTAVPRTHIDDEYANAAEKDPKILLTTSRDPSAPLQQFVKELKFVFPNANRMNRGGQV 120
           DENTAVPR+HIDDEYA AAEKDPKILLTTSRDPSAPL+QFVKEL  VFPNA RMNRGGQV
Sbjct: 61  DENTAVPRSHIDDEYAFAAEKDPKILLTTSRDPSAPLKQFVKELSIVFPNAERMNRGGQV 120

Query: 121 ISDIIETCRSHDYTDVILVHEHRGVPDGLIVCHLPFGPTAYFGLLNVVTRHEIKDRKAMG 180
           IS+II++CRSHDYTDVILVHEHRGVPDGLIVCHLPFGPTAYFGLLNVVTRHEI+DRKA+G
Sbjct: 121 ISEIIDSCRSHDYTDVILVHEHRGVPDGLIVCHLPFGPTAYFGLLNVVTRHEIRDRKAVG 180

Query: 181 TMPEAYPHVILENFSTKLGERTANILKHLFPVPKPDTKRIVTLANQSDYISFRHHIYEKP 240
           TMPEAYPH+IL+NF TKLGERTANILKHLFPVPKPDTKRIVT AN+SDYISFRHHIYEK 
Sbjct: 181 TMPEAYPHIILDNFETKLGERTANILKHLFPVPKPDTKRIVTFANKSDYISFRHHIYEKQ 240

Query: 241 GGPKSIELKEIGPRFELRLYQIKLGTVDQAEAQTEWVIRPFMNTSKKRKFL 291
            GPKS+ELKEIGPRFELRLYQIKLGTVDQAEAQTEWVIRP+MNT++KR FL
Sbjct: 241 AGPKSVELKEIGPRFELRLYQIKLGTVDQAEAQTEWVIRPYMNTTRKRNFL 291


>Medtr8g023820.1 | ribosome production factor-like protein | HC |
           chr8:8674696-8680125 | 20130731
          Length = 354

 Score =  148 bits (374), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 90/245 (36%), Positives = 133/245 (54%), Gaps = 29/245 (11%)

Query: 73  DEYAN--AAEKDPKILLTTSRDPSAPLQQFVKELKFVFPNANRMNRGGQVISDIIETCRS 130
           DE+++    ++ PKIL+TT R  S      + EL  V PNA+   RG   +  I+E    
Sbjct: 113 DEFSSILKRQQSPKILITTCRFNSTRGPALISELLQVIPNAHYFKRGTYDLKKIVEYANK 172

Query: 131 HDYTDVILVHEHRGVPDGLIVCHLPFGPTAYFGLLNVVTRHEIKDRKAMGTMPEAYPHVI 190
            D+T +++VH +R  P+ L++  LP GPTA+F L N+V R +IK+    G      P ++
Sbjct: 173 KDFTSLVVVHTNRREPNALLIIGLPEGPTAHFKLTNLVLRKDIKNH---GVPTSHQPELV 229

Query: 191 LENFSTKLGERTANILKHLFPV-PKPDTKRIVTLANQSDYISFRHHIY------------ 237
           L NF+T+LG R   +++ LFP  P+   +R+VT  NQ D+I FRHH Y            
Sbjct: 230 LNNFTTRLGHRVGRMIQSLFPQDPEFKGRRVVTFHNQRDFIFFRHHRYIFETKEIKKIES 289

Query: 238 ----------EKPGGPKSI-ELKEIGPRFELRLYQIKLGTVDQAEAQTEWVIRPFMNTSK 286
                     EK    K+I  L+E GPRF L+L  ++ GT D    + EWV +P M+TS+
Sbjct: 290 KGKNDEDGKSEKVPDHKTIARLQECGPRFTLKLKSLQHGTFDTKGGEYEWVHKPEMDTSR 349

Query: 287 KRKFL 291
           +R FL
Sbjct: 350 RRFFL 354