Miyakogusa Predicted Gene
- Lj0g3v0260289.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0260289.1 Non Characterized Hit- tr|C5Y314|C5Y314_SORBI
Putative uncharacterized protein Sb05g000690
OS=Sorghu,51.11,5e-18,Serinc,TMS membrane protein/tumour
differentially expressed protein; UNCHARACTERIZED,NULL; SERINE
IN,CUFF.17150.1
(113 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr1g046480.1 | TMS membrane protein/tumor differentially prot... 205 1e-53
Medtr8g103740.3 | serinc-domain serine and sphingolipid biosynth... 142 7e-35
Medtr8g103740.2 | serinc-domain serine and sphingolipid biosynth... 142 7e-35
Medtr6g086060.1 | serinc-domain serine and sphingolipid biosynth... 135 7e-33
Medtr6g086060.2 | serinc-domain serine and sphingolipid biosynth... 135 7e-33
Medtr6g086060.3 | serinc-domain serine and sphingolipid biosynth... 135 7e-33
Medtr8g103740.1 | serinc-domain serine and sphingolipid biosynth... 130 2e-31
Medtr7g057720.2 | serinc-domain serine and sphingolipid biosynth... 70 3e-13
Medtr7g057720.1 | serinc-domain serine and sphingolipid biosynth... 70 3e-13
Medtr2g022060.1 | TMS membrane protein/tumor differentially prot... 67 3e-12
>Medtr1g046480.1 | TMS membrane protein/tumor differentially protein
| HC | chr1:17517299-17521651 | 20130731
Length = 427
Score = 205 bits (521), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 96/113 (84%), Positives = 107/113 (94%)
Query: 1 MAAFSTGIDSKCFQFSKNKVEHEDDIPYNYGFFHMVFSLGAMYFAMLFISWDLNNSARKW 60
+AAFSTGIDSKCFQFSKN+VE+EDDIPY+YGFFHMVFSLGAMYFAMLFISWDLNNSARKW
Sbjct: 315 LAAFSTGIDSKCFQFSKNQVENEDDIPYSYGFFHMVFSLGAMYFAMLFISWDLNNSARKW 374
Query: 61 SIDVGWLSTWVKVINEWFAATIYIWILISPVVRQNKVIGDDRTVQEMTDSVMA 113
SIDVGW+STWVKV+NEWFAATIYIW+LISP+VRQNKV+ +D T+Q DSV A
Sbjct: 375 SIDVGWISTWVKVLNEWFAATIYIWMLISPIVRQNKVMDNDTTMQGRADSVDA 427
>Medtr8g103740.3 | serinc-domain serine and sphingolipid
biosynthesis protein | HC | chr8:43667218-43669962 |
20130731
Length = 212
Score = 142 bits (358), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 58/100 (58%), Positives = 79/100 (79%)
Query: 1 MAAFSTGIDSKCFQFSKNKVEHEDDIPYNYGFFHMVFSLGAMYFAMLFISWDLNNSARKW 60
+A FSTGIDSKCFQF K+ EDD+PY YGFFH VF+ GAMYFAML + W+ ++S RKW
Sbjct: 112 IATFSTGIDSKCFQFRKDDTPAEDDVPYGYGFFHFVFATGAMYFAMLLVGWNSHHSMRKW 171
Query: 61 SIDVGWLSTWVKVINEWFAATIYIWILISPVVRQNKVIGD 100
+IDVGW STWV+++NEW A +Y+W+LI+P++ + + +G
Sbjct: 172 TIDVGWTSTWVRIVNEWLAVCVYLWMLIAPMIWKCRQVGS 211
>Medtr8g103740.2 | serinc-domain serine and sphingolipid
biosynthesis protein | HC | chr8:43666047-43669926 |
20130731
Length = 303
Score = 142 bits (358), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 58/101 (57%), Positives = 79/101 (78%)
Query: 1 MAAFSTGIDSKCFQFSKNKVEHEDDIPYNYGFFHMVFSLGAMYFAMLFISWDLNNSARKW 60
+A FSTGIDSKCFQF K+ EDD+PY YGFFH VF+ GAMYFAML + W+ ++S RKW
Sbjct: 203 IATFSTGIDSKCFQFRKDDTPAEDDVPYGYGFFHFVFATGAMYFAMLLVGWNSHHSMRKW 262
Query: 61 SIDVGWLSTWVKVINEWFAATIYIWILISPVVRQNKVIGDD 101
+IDVGW STWV+++NEW A +Y+W+LI+P++ + + +G
Sbjct: 263 TIDVGWTSTWVRIVNEWLAVCVYLWMLIAPMIWKCRQVGST 303
>Medtr6g086060.1 | serinc-domain serine and sphingolipid
biosynthesis protein | HC | chr6:32241660-32233745 |
20130731
Length = 402
Score = 135 bits (341), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 59/100 (59%), Positives = 77/100 (77%), Gaps = 4/100 (4%)
Query: 1 MAAFSTGIDSKCFQFSK-NKVEHEDDIPYNYGFFHMVFSLGAMYFAMLFISWDLNNSARK 59
+A FSTGIDSKCFQ K +K EDD+PY YGFFH VF+ GAMYFAML I W+ ++S RK
Sbjct: 301 IATFSTGIDSKCFQLRKGDKPAEEDDVPYGYGFFHFVFATGAMYFAMLLIGWNTHHSMRK 360
Query: 60 WSIDVGWLSTWVKVINEWFAATIYIWILISPVV---RQNK 96
WS+DVGW S WV+++NEW A +Y+W+LI+P++ RQ +
Sbjct: 361 WSLDVGWTSAWVRIVNEWLAVCVYLWMLIAPIIWKARQTE 400
>Medtr6g086060.2 | serinc-domain serine and sphingolipid
biosynthesis protein | HC | chr6:32241680-32233809 |
20130731
Length = 402
Score = 135 bits (341), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 59/100 (59%), Positives = 77/100 (77%), Gaps = 4/100 (4%)
Query: 1 MAAFSTGIDSKCFQFSK-NKVEHEDDIPYNYGFFHMVFSLGAMYFAMLFISWDLNNSARK 59
+A FSTGIDSKCFQ K +K EDD+PY YGFFH VF+ GAMYFAML I W+ ++S RK
Sbjct: 301 IATFSTGIDSKCFQLRKGDKPAEEDDVPYGYGFFHFVFATGAMYFAMLLIGWNTHHSMRK 360
Query: 60 WSIDVGWLSTWVKVINEWFAATIYIWILISPVV---RQNK 96
WS+DVGW S WV+++NEW A +Y+W+LI+P++ RQ +
Sbjct: 361 WSLDVGWTSAWVRIVNEWLAVCVYLWMLIAPIIWKARQTE 400
>Medtr6g086060.3 | serinc-domain serine and sphingolipid
biosynthesis protein | HC | chr6:32241660-32233745 |
20130731
Length = 402
Score = 135 bits (341), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 59/100 (59%), Positives = 77/100 (77%), Gaps = 4/100 (4%)
Query: 1 MAAFSTGIDSKCFQFSK-NKVEHEDDIPYNYGFFHMVFSLGAMYFAMLFISWDLNNSARK 59
+A FSTGIDSKCFQ K +K EDD+PY YGFFH VF+ GAMYFAML I W+ ++S RK
Sbjct: 301 IATFSTGIDSKCFQLRKGDKPAEEDDVPYGYGFFHFVFATGAMYFAMLLIGWNTHHSMRK 360
Query: 60 WSIDVGWLSTWVKVINEWFAATIYIWILISPVV---RQNK 96
WS+DVGW S WV+++NEW A +Y+W+LI+P++ RQ +
Sbjct: 361 WSLDVGWTSAWVRIVNEWLAVCVYLWMLIAPIIWKARQTE 400
>Medtr8g103740.1 | serinc-domain serine and sphingolipid
biosynthesis protein | HC | chr8:43662753-43668956 |
20130731
Length = 409
Score = 130 bits (328), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 55/92 (59%), Positives = 71/92 (77%)
Query: 1 MAAFSTGIDSKCFQFSKNKVEHEDDIPYNYGFFHMVFSLGAMYFAMLFISWDLNNSARKW 60
+A FSTGIDSKCFQF K+ EDD+PY YGFFH VF+ GAMYFAML + W+ ++S RKW
Sbjct: 297 IATFSTGIDSKCFQFRKDDTPAEDDVPYGYGFFHFVFATGAMYFAMLLVGWNSHHSMRKW 356
Query: 61 SIDVGWLSTWVKVINEWFAATIYIWILISPVV 92
+IDVGW STWV+++NEW A +Y +I+P +
Sbjct: 357 TIDVGWTSTWVRIVNEWLAVCVYCKKIITPSI 388
>Medtr7g057720.2 | serinc-domain serine and sphingolipid
biosynthesis protein | HC | chr7:20883294-20879112 |
20130731
Length = 427
Score = 70.5 bits (171), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 45/76 (59%)
Query: 21 EHEDDIPYNYGFFHMVFSLGAMYFAMLFISWDLNNSARKWSIDVGWLSTWVKVINEWFAA 80
E + Y+Y FFH++FSL +MY AML W + +DVGW S WV+++ W A
Sbjct: 350 EKAKPVTYSYAFFHLIFSLASMYSAMLLTGWSTSVGESGKLVDVGWPSVWVRIVTCWATA 409
Query: 81 TIYIWILISPVVRQNK 96
+Y+W L++P++ +
Sbjct: 410 LLYLWSLVAPIMFPER 425
>Medtr7g057720.1 | serinc-domain serine and sphingolipid
biosynthesis protein | HC | chr7:20883294-20879112 |
20130731
Length = 410
Score = 70.5 bits (171), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 45/76 (59%)
Query: 21 EHEDDIPYNYGFFHMVFSLGAMYFAMLFISWDLNNSARKWSIDVGWLSTWVKVINEWFAA 80
E + Y+Y FFH++FSL +MY AML W + +DVGW S WV+++ W A
Sbjct: 333 EKAKPVTYSYAFFHLIFSLASMYSAMLLTGWSTSVGESGKLVDVGWPSVWVRIVTCWATA 392
Query: 81 TIYIWILISPVVRQNK 96
+Y+W L++P++ +
Sbjct: 393 LLYLWSLVAPIMFPER 408
>Medtr2g022060.1 | TMS membrane protein/tumor differentially protein
| HC | chr2:7552461-7546938 | 20130731
Length = 409
Score = 67.4 bits (163), Expect = 3e-12, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 26 IPYNYGFFHMVFSLGAMYFAMLFISWDLNNSARKWSIDVGWLSTWVKVINEWFAATIYIW 85
+ Y+Y FFH++F+L +MY AML W + + IDVGW S WV++ EW A +Y+W
Sbjct: 337 VSYSYSFFHLIFALASMYSAMLLSGWTSTSESSDL-IDVGWTSVWVRIGTEWVTAGLYLW 395
Query: 86 ILISPVV 92
L++P++
Sbjct: 396 SLLAPLL 402