Miyakogusa Predicted Gene

Lj0g3v0260169.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0260169.1 tr|F2CSR9|F2CSR9_HORVD Predicted protein
OS=Hordeum vulgare var. distichum PE=2
SV=1,43.94,1e-18,mTERF,Mitochodrial transcription termination
factor-related; CGI-12 PROTEIN-RELATED,NULL; seg,NULL; ,CUFF.17139.1
         (178 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g081270.1 | transcription termination factor family protei...   273   8e-74
Medtr5g041630.1 | transcription termination factor family protei...   109   1e-24
Medtr2g049780.1 | transcription termination factor family protei...   106   1e-23
Medtr2g067230.1 | transcription termination factor family protei...   102   3e-22
Medtr6g003960.1 | transcription termination factor family protei...    80   1e-15
Medtr2g034600.1 | transcription termination factor family protei...    76   2e-14
Medtr2g034600.2 | transcription termination factor family protei...    76   2e-14
Medtr2g034600.3 | transcription termination factor family protei...    76   2e-14
Medtr4g084630.1 | transcription termination factor family protei...    71   5e-13
Medtr4g070060.1 | transcription termination factor family protei...    61   5e-10
Medtr3g092710.1 | plastid transcriptionally active 15 protein | ...    56   2e-08
Medtr1g115415.1 | transcription termination factor family protei...    55   3e-08
Medtr5g094610.1 | transcription termination factor family protei...    54   5e-08
Medtr5g068860.1 | transcription termination factor family protei...    54   1e-07

>Medtr7g081270.1 | transcription termination factor family protein |
           HC | chr7:31009132-31008262 | 20130731
          Length = 284

 Score =  273 bits (697), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 129/158 (81%), Positives = 144/158 (91%), Gaps = 1/158 (0%)

Query: 22  QESRGLILRCPNLLFSDVNLCLRPTLQFLRE-VGVCGLNRPTNRNAHLLNTRVGKLRVKV 80
           ++S GLILRCPNLLF+DVN  L+PTL FLRE VGV  LNRPTNRNAHLLNTRV K+R++V
Sbjct: 127 EDSHGLILRCPNLLFTDVNHILKPTLHFLREEVGVSNLNRPTNRNAHLLNTRVEKMRMRV 186

Query: 81  RFLEEDVGLSYEEAVNVCARLPAIFGYDVENNLWPKFAFLVEEMERDLEELKKFPQYFGF 140
           RFLEE VG +YEEA NVCARLPAI GYDVENNLWPKF +LV+EMER++EELKKFPQ+FGF
Sbjct: 187 RFLEEVVGFTYEEARNVCARLPAILGYDVENNLWPKFVYLVKEMEREVEELKKFPQFFGF 246

Query: 141 SLEKRIVPRHFHLKERGVRIPLNRMLMWGDDKFYAKWK 178
           SL+KRIVPRH HLKERGVRIPLNRMLMWGD+KFYAKWK
Sbjct: 247 SLDKRIVPRHLHLKERGVRIPLNRMLMWGDEKFYAKWK 284


>Medtr5g041630.1 | transcription termination factor family protein |
           HC | chr5:18278077-18276642 | 20130731
          Length = 308

 Score =  109 bits (273), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/144 (45%), Positives = 82/144 (56%), Gaps = 2/144 (1%)

Query: 28  ILRCPNLLFSDVNLCLRPTLQFLREVGVCGLNRPTNRNAHLLNTRV-GKLRVKVRFLEED 86
           ILRCP LL S V   LRP L FLRE+G  G +  T +   LL + V   L  KV FL   
Sbjct: 147 ILRCPRLLVSSVENRLRPALCFLRELGFVGPHSLTCQTTLLLVSSVEDTLLPKVEFLM-G 205

Query: 87  VGLSYEEAVNVCARLPAIFGYDVENNLWPKFAFLVEEMERDLEELKKFPQYFGFSLEKRI 146
           +G +  E  N+  R P +  + V+ NL PKF F ++EM  D+ ELK+FPQYF FSLE RI
Sbjct: 206 LGFTRVEVSNMVVRSPGLLTFSVDKNLAPKFEFFLKEMNGDVAELKRFPQYFSFSLEGRI 265

Query: 147 VPRHFHLKERGVRIPLNRMLMWGD 170
            PRH  L   G+ + L  ML   D
Sbjct: 266 KPRHAMLVRLGLSLSLQEMLQISD 289


>Medtr2g049780.1 | transcription termination factor family protein |
           HC | chr2:22364848-22363786 | 20130731
          Length = 313

 Score =  106 bits (264), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 62/150 (41%), Positives = 89/150 (59%), Gaps = 2/150 (1%)

Query: 25  RGLILRCPNLLFSDVNLCLRPTLQFLREVGVCGLNRPTNRNAHLLNTRVGKLRV-KVRFL 83
           R +I +CP LL S V   L+P L +L  +G+  L     ++  LL + V +  + K++ L
Sbjct: 156 RKVIKKCPRLLTSSVVDQLKPALFYLNRLGLRDLEALAYQDCVLLVSNVERTIIPKLKHL 215

Query: 84  EEDVGLSYEEAVNVCARLPAIFGYDVENNLWPKFAFLVEEMERDLEELKKFPQYFGFSLE 143
           E  +G + EEA  +  R PA+  + +ENN  PKF +   EM+  LEELK+FPQYF FSLE
Sbjct: 216 E-SLGFTKEEARCMVLRCPALLTFSIENNFQPKFEYFSVEMKGKLEELKEFPQYFSFSLE 274

Query: 144 KRIVPRHFHLKERGVRIPLNRMLMWGDDKF 173
            RI  RH  + E G+ +PL+ ML   DD+F
Sbjct: 275 NRIKVRHMEVVESGINLPLSLMLKSTDDEF 304


>Medtr2g067230.1 | transcription termination factor family protein |
           HC | chr2:28121064-28123893 | 20130731
          Length = 328

 Score =  102 bits (253), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 57/150 (38%), Positives = 88/150 (58%), Gaps = 6/150 (4%)

Query: 25  RGLILRCPNLLFSDVNLCLRPTLQFLREVGVCGLNRPTNRNAHLLNTRV-GKLRVKVRFL 83
           + +I R P L+  +V+  LRPT+ FL+ +G+       N++ HLL+  V  K   ++ + 
Sbjct: 155 KHVINRRPRLIICNVDKQLRPTMYFLQSIGI----EEVNKHTHLLSCSVEDKFIPRIEYF 210

Query: 84  EEDVGLSYEEAVNVCARLPAIFGYDVENNLWPKFAFLVEEMERDLEELKKFPQYFGFSLE 143
           + ++G S  +  ++  R P +F Y ++NNL PK+ + V EM RDL+E+K+FP YF FSLE
Sbjct: 211 K-NIGFSRRDTTSMFRRFPQLFCYSIKNNLEPKYNYFVVEMGRDLKEVKEFPHYFSFSLE 269

Query: 144 KRIVPRHFHLKERGVRIPLNRMLMWGDDKF 173
            RI PRH    E GV  PL  +L   +  F
Sbjct: 270 NRIKPRHKRCVEMGVCFPLPLLLKTSEVTF 299


>Medtr6g003960.1 | transcription termination factor family protein |
           HC | chr6:35948-29152 | 20130731
          Length = 609

 Score = 79.7 bits (195), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 83/159 (52%), Gaps = 3/159 (1%)

Query: 22  QESRGLIL-RCPNLLFSDVNLCLRPTLQFLREVGVCGLNRP--TNRNAHLLNTRVGKLRV 78
           +E+ G IL RCP +  + ++  L+  ++FL  + V     P    +   LL + + K   
Sbjct: 433 KENIGRILARCPEIFATSISKTLQSKIEFLSRIEVSKAYIPLVIRKYPELLVSDINKTLP 492

Query: 79  KVRFLEEDVGLSYEEAVNVCARLPAIFGYDVENNLWPKFAFLVEEMERDLEELKKFPQYF 138
           +       VGLS +E   +  +   + GY ++  L PK  FLV  M+R + ++ ++P+YF
Sbjct: 493 QRIVYFMKVGLSEKEIALMVRKFSPLLGYSIKEVLMPKLEFLVNSMKRPVRDVVRYPRYF 552

Query: 139 GFSLEKRIVPRHFHLKERGVRIPLNRMLMWGDDKFYAKW 177
            +SLEK+I PR+  LK R +   L  ML   D++F A +
Sbjct: 553 SYSLEKKIKPRYRVLKGRNIECSLKDMLAKNDEEFAAAF 591


>Medtr2g034600.1 | transcription termination factor family protein |
           HC | chr2:13233091-13236843 | 20130731
          Length = 557

 Score = 75.9 bits (185), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 57/157 (36%), Positives = 82/157 (52%), Gaps = 11/157 (7%)

Query: 22  QESRGLIL-RCPNLLFSDVNLCLRPTLQFLREVGV-CGL---NRPTNRNAHLLNTRVGKL 76
           +E+ G IL RCP ++   V   LRPT  + R +GV  GL   N P N     L+      
Sbjct: 393 EENIGKILTRCPTIVSYSVEDNLRPTAMYFRSLGVDVGLLLFNCPQNFG---LSIEANIK 449

Query: 77  RVKVRFLEEDVGLSYEEAVNVCARLPAIFGYDVENNLWPKFAFLVEEMERDLEELKKFPQ 136
            V   FLE   G + EE   +  R   ++ + +  NL PK+ + +  M+    EL KFPQ
Sbjct: 450 PVTQFFLER--GYTMEEIGIMIKRYGMLYTFSLTENLMPKWDYFLT-MDYPKSELVKFPQ 506

Query: 137 YFGFSLEKRIVPRHFHLKERGVRIPLNRMLMWGDDKF 173
           +FG+SLE+RI PR+  +K  GVR+ LN++L      F
Sbjct: 507 FFGYSLEQRIKPRYTRVKISGVRLLLNQVLSLSSSNF 543


>Medtr2g034600.2 | transcription termination factor family protein |
           HC | chr2:13233091-13236856 | 20130731
          Length = 561

 Score = 75.9 bits (185), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 57/157 (36%), Positives = 82/157 (52%), Gaps = 11/157 (7%)

Query: 22  QESRGLIL-RCPNLLFSDVNLCLRPTLQFLREVGV-CGL---NRPTNRNAHLLNTRVGKL 76
           +E+ G IL RCP ++   V   LRPT  + R +GV  GL   N P N     L+      
Sbjct: 397 EENIGKILTRCPTIVSYSVEDNLRPTAMYFRSLGVDVGLLLFNCPQNFG---LSIEANIK 453

Query: 77  RVKVRFLEEDVGLSYEEAVNVCARLPAIFGYDVENNLWPKFAFLVEEMERDLEELKKFPQ 136
            V   FLE   G + EE   +  R   ++ + +  NL PK+ + +  M+    EL KFPQ
Sbjct: 454 PVTQFFLER--GYTMEEIGIMIKRYGMLYTFSLTENLMPKWDYFLT-MDYPKSELVKFPQ 510

Query: 137 YFGFSLEKRIVPRHFHLKERGVRIPLNRMLMWGDDKF 173
           +FG+SLE+RI PR+  +K  GVR+ LN++L      F
Sbjct: 511 FFGYSLEQRIKPRYTRVKISGVRLLLNQVLSLSSSNF 547


>Medtr2g034600.3 | transcription termination factor family protein |
           HC | chr2:13233799-13236843 | 20130731
          Length = 496

 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/157 (36%), Positives = 82/157 (52%), Gaps = 11/157 (7%)

Query: 22  QESRGLIL-RCPNLLFSDVNLCLRPTLQFLREVGV-CGL---NRPTNRNAHLLNTRVGKL 76
           +E+ G IL RCP ++   V   LRPT  + R +GV  GL   N P N     L+      
Sbjct: 332 EENIGKILTRCPTIVSYSVEDNLRPTAMYFRSLGVDVGLLLFNCPQNFG---LSIEANIK 388

Query: 77  RVKVRFLEEDVGLSYEEAVNVCARLPAIFGYDVENNLWPKFAFLVEEMERDLEELKKFPQ 136
            V   FLE   G + EE   +  R   ++ + +  NL PK+ + +  M+    EL KFPQ
Sbjct: 389 PVTQFFLER--GYTMEEIGIMIKRYGMLYTFSLTENLMPKWDYFLT-MDYPKSELVKFPQ 445

Query: 137 YFGFSLEKRIVPRHFHLKERGVRIPLNRMLMWGDDKF 173
           +FG+SLE+RI PR+  +K  GVR+ LN++L      F
Sbjct: 446 FFGYSLEQRIKPRYTRVKISGVRLLLNQVLSLSSSNF 482


>Medtr4g084630.1 | transcription termination factor family protein |
           HC | chr4:32962573-32960937 | 20130731
          Length = 332

 Score = 71.2 bits (173), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 84/158 (53%), Gaps = 12/158 (7%)

Query: 27  LILRCPNLLFSDVNLCLRPTLQFLREVG-------VCGLNRPTNRNAHLLNTRVGKLRVK 79
           ++++ P ++   V+  LRPT +FL+ +G       V  LN P+     +L+  V K+ V 
Sbjct: 170 IMVKDPYIMGYSVDKRLRPTSEFLKSIGLTEHDLQVLALNFPS-----ILSRDVDKVLVH 224

Query: 80  VRFLEEDVGLSYEEAVNVCARLPAIFGYDVENNLWPKFAFLVEEMERDLEELKKFPQYFG 139
                ++ G    + V++    P I    V N+L P+  FLV+ M R+++E+  +P +F 
Sbjct: 225 NYDFLKNCGFQGRQIVDLVVGYPPILIKSVRNSLEPRIKFLVDVMGREVDEIIDYPCFFR 284

Query: 140 FSLEKRIVPRHFHLKERGVRIPLNRMLMWGDDKFYAKW 177
             L+K++V RH  LK+R +   L+ ML   + KF+ K+
Sbjct: 285 HGLKKKLVSRHKLLKKRNLNCSLSEMLDCNEKKFHLKF 322


>Medtr4g070060.1 | transcription termination factor family protein |
           HC | chr4:26370303-26365871 | 20130731
          Length = 617

 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 80/151 (52%), Gaps = 6/151 (3%)

Query: 27  LILRCPNLLFSDVNLCLRPTLQFL-REVGVCGLNRP--TNRNAHLLN-TRVGKLRVKVRF 82
           ++++ P LL   +   +RP + FL  + GV   N P        LL  + V KL   V++
Sbjct: 437 MLVKFPTLLTYSLYKKIRPVVIFLMTKAGVTEENIPKVIALGPELLGCSIVHKLEGNVKY 496

Query: 83  LEEDVGLSYEEAVNVCARLPAIFGYDVENNLWPKFAFLVEEMERDLEELKKFPQYFGFSL 142
               +G+  ++   + A  P +  Y+++  L PK+ +L + M R L++  +FP++F +SL
Sbjct: 497 YL-SLGIRLQQLGEMIADFPMLLRYNIDV-LRPKYTYLRKTMVRTLKDAIEFPRFFSYSL 554

Query: 143 EKRIVPRHFHLKERGVRIPLNRMLMWGDDKF 173
           E RI+PRH  L E  + + L  ML   D++F
Sbjct: 555 EGRIIPRHKVLVENQINVKLKCMLACTDEEF 585


>Medtr3g092710.1 | plastid transcriptionally active 15 protein | HC
           | chr3:42360298-42362077 | 20130731
          Length = 506

 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 2/92 (2%)

Query: 88  GLSYEEAVNVCARLPAIFGYDVENNLWPKFAFLVEEMERDLEELKKFPQYFGFSLEKRIV 147
           G S E+   +  + P I  Y    +L  K  +++EEM RD++EL  FP Y G+ L+ RI 
Sbjct: 406 GFSLEDIFAMSKKHPQILQYH-HASLEKKMDYMIEEMNRDIQELLDFPAYLGYKLDDRIK 464

Query: 148 PRHFHLKE-RGVRIPLNRMLMWGDDKFYAKWK 178
            R+   K+ RG ++ +N++L    + F  K K
Sbjct: 465 HRYEIKKDLRGEQMSINKLLTVSSENFTGKRK 496


>Medtr1g115415.1 | transcription termination factor family protein |
           HC | chr1:52109146-52107512 | 20130731
          Length = 501

 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 1/86 (1%)

Query: 88  GLSYEEAVNVCARLPAIFGYDVENNLWPKFAFLVEEMERDLEELKKFPQYFGFSLEKRIV 147
            +  ++  ++  + P +    VE  +   + F   EM R ++EL +FP+YF +SLE RI 
Sbjct: 366 AIPSQDVASMVIKCPQLVALRVEL-MKNSYYFFKSEMGRPVKELVEFPEYFTYSLESRIK 424

Query: 148 PRHFHLKERGVRIPLNRMLMWGDDKF 173
           PR+  LK +G++  LN ML   D +F
Sbjct: 425 PRYQRLKTKGIKCSLNWMLNCSDQRF 450


>Medtr5g094610.1 | transcription termination factor family protein |
           HC | chr5:41344877-41348219 | 20130731
          Length = 503

 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 65/155 (41%), Gaps = 39/155 (25%)

Query: 27  LILRCPNLLFSDVNLCLRPTLQFLREVGVCGLNRPTNRNAHLLNTRVGKLRVKVRFLEED 86
           ++ + P LL   ++  L P + FLR +G+        +NA +L                 
Sbjct: 356 MVTKHPQLLHYSIDDGLLPRINFLRSIGM--------KNADILK---------------- 391

Query: 87  VGLSYEEAVNVCARLPAIFGYDVENNLWPKFAFLVEEMERDLEELKKFPQYFGFSLEKRI 146
                     +   L  +    +E NL PK+ +LV E+  +++ L K+P Y   SL++RI
Sbjct: 392 ----------ILTSLTQVLSLSLEANLKPKYLYLVNELHNEVQTLTKYPMYLSLSLDQRI 441

Query: 147 VPRHFHL----KERGVRIPLNRMLMWGDDKFYAKW 177
            PRH  L    K      PL   L+  D+ F  +W
Sbjct: 442 RPRHKFLVSLKKAPKGPFPLGS-LVPTDESFCQRW 475


>Medtr5g068860.1 | transcription termination factor family protein |
           HC | chr5:29165945-29163659 | 20130731
          Length = 530

 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 2/94 (2%)

Query: 80  VRFLEEDVGLSYEEAVNVCARLPAIFGYDVENNLWPKFAFLVEEMERDLEELKKFPQYFG 139
           V FL+ D G S ++   +    P +   ++ + +   F +   EMER LE+L +FP +F 
Sbjct: 391 VDFLK-DCGFSVDQMRKMIVGCPQLLALNI-DIMKLSFDYFQSEMERPLEDLVEFPAFFT 448

Query: 140 FSLEKRIVPRHFHLKERGVRIPLNRMLMWGDDKF 173
           + LE  I PRH  + ++G++  L  ML   D+KF
Sbjct: 449 YGLESTIKPRHNMVTKKGLKCSLAWMLNCSDEKF 482