Miyakogusa Predicted Gene

Lj0g3v0260059.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0260059.1 tr|A9RVJ3|A9RVJ3_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_119940,36.7,0.00000000000001,UNCHARACTERIZED,NULL,
CUFF.17140.1
         (116 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g053360.1 | tubulin-binding cofactor C domain protein | HC...   207   1e-54
Medtr7g092810.2 | tubulin-binding cofactor C domain protein | HC...   199   4e-52
Medtr7g092810.1 | tubulin-binding cofactor C domain protein | HC...   199   4e-52

>Medtr1g053360.1 | tubulin-binding cofactor C domain protein | HC |
           chr1:22415727-22424596 | 20130731
          Length = 553

 Score =  207 bits (528), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 95/116 (81%), Positives = 103/116 (88%)

Query: 1   MLDPHDSLSHSAGVSDVQAESATQLDPDQFTNFVIPDWIAGDSTVTAKNNPFTLPDVYVA 60
           MLDPHDSLSH AGVSDVQAESAT+LDPDQFTNFVIP+W+AG ST + K+NPF LPD Y A
Sbjct: 438 MLDPHDSLSHPAGVSDVQAESATRLDPDQFTNFVIPNWLAGASTGSTKDNPFALPDAYAA 497

Query: 61  SQHRNQKNLGEIRKLLQEASLEESRKREFSSALHVYFKDWLYASGNIRQLYCLQGD 116
           SQH+NQ NL E+RKL+ EASLEESRKRE SS LHVYFKDWLYASGNIRQLYCLQ D
Sbjct: 498 SQHKNQNNLEEVRKLIHEASLEESRKRELSSVLHVYFKDWLYASGNIRQLYCLQAD 553


>Medtr7g092810.2 | tubulin-binding cofactor C domain protein | HC |
           chr7:36822281-36832151 | 20130731
          Length = 558

 Score =  199 bits (506), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 91/116 (78%), Positives = 105/116 (90%)

Query: 1   MLDPHDSLSHSAGVSDVQAESATQLDPDQFTNFVIPDWIAGDSTVTAKNNPFTLPDVYVA 60
           M+DPHDSLSH AGVSD QAESA ++DPDQFTNFVIP+W+ G+ST + K+NPFTLP+ Y+A
Sbjct: 443 MVDPHDSLSHPAGVSDAQAESAARVDPDQFTNFVIPNWLEGESTGSTKDNPFTLPEGYMA 502

Query: 61  SQHRNQKNLGEIRKLLQEASLEESRKREFSSALHVYFKDWLYASGNIRQLYCLQGD 116
           SQ RN++NLGEIR+LL+EA LEESRKRE SSALHVYFKDWLYASGNIRQLY LQGD
Sbjct: 503 SQQRNERNLGEIRQLLREAPLEESRKRELSSALHVYFKDWLYASGNIRQLYYLQGD 558


>Medtr7g092810.1 | tubulin-binding cofactor C domain protein | HC |
           chr7:36822281-36832151 | 20130731
          Length = 558

 Score =  199 bits (506), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 91/116 (78%), Positives = 105/116 (90%)

Query: 1   MLDPHDSLSHSAGVSDVQAESATQLDPDQFTNFVIPDWIAGDSTVTAKNNPFTLPDVYVA 60
           M+DPHDSLSH AGVSD QAESA ++DPDQFTNFVIP+W+ G+ST + K+NPFTLP+ Y+A
Sbjct: 443 MVDPHDSLSHPAGVSDAQAESAARVDPDQFTNFVIPNWLEGESTGSTKDNPFTLPEGYMA 502

Query: 61  SQHRNQKNLGEIRKLLQEASLEESRKREFSSALHVYFKDWLYASGNIRQLYCLQGD 116
           SQ RN++NLGEIR+LL+EA LEESRKRE SSALHVYFKDWLYASGNIRQLY LQGD
Sbjct: 503 SQQRNERNLGEIRQLLREAPLEESRKRELSSALHVYFKDWLYASGNIRQLYYLQGD 558