Miyakogusa Predicted Gene

Lj0g3v0259769.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0259769.1 Non Characterized Hit- tr|I1JQE0|I1JQE0_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,38.51,0.000000000000001,TRAF domain-like,TRAF-like; ZF_TRAF,Zinc
finger, TRAF-type; TNF RECEPTOR ASSOCIATED FACTOR,NULL;
seg,CUFF.17115.1
         (408 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g054715.1 | TRAF-type zinc finger protein | HC | chr1:2388...   597   e-171

>Medtr1g054715.1 | TRAF-type zinc finger protein | HC |
           chr1:23886620-23891491 | 20130731
          Length = 424

 Score =  597 bits (1539), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 290/396 (73%), Positives = 329/396 (83%), Gaps = 7/396 (1%)

Query: 1   MSVLSSMELPTTNVDLSPEKIKDEKEGGPMIHCDLCDTEVIHKMAQMFVPGLASACVDNT 60
           MSVLSSME PT +VDLSP +I++EKEGGPM HCDL DTEV+HK+AQMF+PGLASACVDNT
Sbjct: 1   MSVLSSMEAPTVDVDLSPARIENEKEGGPMFHCDLHDTEVVHKLAQMFLPGLASACVDNT 60

Query: 61  TGDPFKTPGSVVNDLRKDMIDYLTQRSESFVAESVILEGTGPDDEVSDHPFDIVSYFVDD 120
           TG  F TPGSV + LRK+MID+LT RSESFVAE+VIL+  G D  VSDHPFDI+S FVDD
Sbjct: 61  TG--FNTPGSVADGLRKEMIDFLTLRSESFVAETVILDD-GADGGVSDHPFDIISSFVDD 117

Query: 121 FVDSKRNLFSKVSGWLLSDKREDKIDDFVQEIEMNGFWSLDRRETIAETLLKNVDFKNLF 180
           FVDSKRNL S+VSGWLLSDKREDKIDDFVQE+EMNGFW LDRRE +AE LLKNVDFKN F
Sbjct: 118 FVDSKRNLLSQVSGWLLSDKREDKIDDFVQEMEMNGFWLLDRREKVAENLLKNVDFKNSF 177

Query: 181 HCSMKFNSAEDLAKHTEKCNFKPMICQNEGCNNRFSTRHLKEHDSTCPFKIIPCEQKCTD 240
           HCS  F + ++L  H + CNFK + C NEGCN RFS  HLK+HDS CPFKIIPCEQKCTD
Sbjct: 178 HCSASFVNKDELVAHVDNCNFKSVTCHNEGCNARFSAVHLKDHDSHCPFKIIPCEQKCTD 237

Query: 241 SLMRRQMDRHCITECPMKLVNCPFYSVGCRSAISQCMIEKHCADDLHSHLLHILKGIHRE 300
           SLMRR MDRHCIT CPMKLVNCPFY+VGCRSAI+QCM+ KHC+DDL+SHLLH+LKGIH++
Sbjct: 238 SLMRRDMDRHCITVCPMKLVNCPFYAVGCRSAIAQCMVGKHCSDDLNSHLLHLLKGIHKD 297

Query: 301 ASGEDLKRRVEQIVQAXXXXXLAEAKEVRSLKNIVKALEAKLGPLEVS-AEKTSAETASM 359
           ASG DL RRVEQIVQA     LAEA++ R+ K IV+ LEAKLGPLEV+  EKTS ET + 
Sbjct: 298 ASGGDLNRRVEQIVQASTNNRLAEARDARAFKLIVRDLEAKLGPLEVNLIEKTSTETVAK 357

Query: 360 NEDSEDRSTGTKGGEQSLQALNSPDKVEVSAILNKN 395
           NEDSED  T TKG   S + L S DK E+SA+LNKN
Sbjct: 358 NEDSEDTGTETKG---STETLASSDKAEMSAVLNKN 390