Miyakogusa Predicted Gene

Lj0g3v0259499.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0259499.1 Non Characterized Hit- tr|K3XE03|K3XE03_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si000120,72,0.0000000000001,DNA binding domain with preference for
A/T r,AT hook, DNA-binding motif; AT_hook,AT hook,
DNA-bindin,CUFF.17094.1
         (354 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g060580.1 | transducin/WD40 repeat protein | HC | chr1:263...   325   3e-89

>Medtr1g060580.1 | transducin/WD40 repeat protein | HC |
           chr1:26357922-26370061 | 20130731
          Length = 968

 Score =  325 bits (834), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 205/396 (51%), Positives = 246/396 (62%), Gaps = 79/396 (19%)

Query: 1   MNVGGSVWALDWCPQIHEEPDCSVKCEFVAVATHPPGSSYHKMGDSLVGRGVVQIWCLLN 60
           MNVGGSVWALDWCP++H EPDCS+KCEF+AVA HPPGSSYHKMG SL GRG VQIWCLLN
Sbjct: 175 MNVGGSVWALDWCPRMHGEPDCSIKCEFIAVAAHPPGSSYHKMGASLTGRGAVQIWCLLN 234

Query: 61  IREHNEDTSSVTEKRKVRPKKDGSTKDKSSQIKRPRGRPRKNST---------------- 104
            REHNE+ S +  K++ +PKKD +T DKS +IKRPRGRPRKN T                
Sbjct: 235 SREHNEEVSYLPGKKEKKPKKDTATNDKSIEIKRPRGRPRKNPTENNEEISPITNKRKRG 294

Query: 105 -------VIVVDDTNCETQHILSLEVQFAGKCIEFSAPDGNLENSEEMLPTTHKRRRGPK 157
                   I VD TNC T++I S            S P+GN EN+EE+L  T+K ++ PK
Sbjct: 295 RPKKNPTAIAVDSTNCGTKYIAS-----------GSVPNGNNENNEEILRITYKSKKRPK 343

Query: 158 KNNATNEKPAPMKRPRGRPKKNSTEVTASDSNCKDQFVPLAVQFPEDLAEFNSPIVAYGN 217
                N K                + T SD NC++QFVPL VQ P D AEF SP V  G+
Sbjct: 344 GRPKKNSK----------------DGTVSDPNCENQFVPLTVQLP-DSAEFISPDVVPGS 386

Query: 218 CNDHAAQQCSHTNQK------------------------HAKKADFAHDSKAL---SRLN 250
            ++H +QQ S+T  K                        +AKKA  A+DS+ L   SRL+
Sbjct: 387 SDEHHSQQFSNTKGKNAKKAAANTKGKNAKKAAANTKGKNAKKAASAYDSETLVARSRLD 446

Query: 251 INHMEGRYNEGMSQPLLIQCENETNYQLCSSSELEPPAATCSVP-DITLPRVVSCLAHNG 309
           INH E   +   S+PLLIQCENE N+Q   S  LEP A+TC +P ++ LPRVVSCLAHNG
Sbjct: 447 INHRERSCSPDTSRPLLIQCENEANHQPHGSPVLEPQASTCPIPQNVALPRVVSCLAHNG 506

Query: 310 KVAWDVKWRPLNISEPLCKYRMGYLAVLLGNGSLEV 345
           KVAWDVKWRPL+  +  CK+RMGYLAVLLGNGSLEV
Sbjct: 507 KVAWDVKWRPLSNLDSSCKHRMGYLAVLLGNGSLEV 542